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Items: 1 to 20 of 80

1.

The ProFunc Function Prediction Server.

Laskowski RA.

Methods Mol Biol. 2017;1611:75-95. doi: 10.1007/978-1-4939-7015-5_7.

PMID:
28451973
2.

Structural analysis of pathogenic mutations in the DYRK1A gene in patients with developmental disorders.

Evers JM, Laskowski RA, Bertolli M, Clayton-Smith J, Deshpande C, Eason J, Elmslie F, Flinter F, Gardiner C, Hurst JA, Kingston H, Kini U, Lampe AK, Lim D, Male A, Naik S, Parker MJ, Price S, Robert L, Sarkar A, Straub V, Woods G, Thornton JM; DDD Study, Wright CF.

Hum Mol Genet. 2017 Feb 1;26(3):519-526. doi: 10.1093/hmg/ddw409.

3.

Chopping and Changing: the Evolution of the Flavin-dependent Monooxygenases.

Mascotti ML, Juri Ayub M, Furnham N, Thornton JM, Laskowski RA.

J Mol Biol. 2016 Jul 31;428(15):3131-46. doi: 10.1016/j.jmb.2016.07.003. Epub 2016 Jul 14.

4.

Sequence-Specific Recognition of DNA by Proteins: Binding Motifs Discovered Using a Novel Statistical/Computational Analysis.

Jakubec D, Laskowski RA, Vondrasek J.

PLoS One. 2016 Jul 6;11(7):e0158704. doi: 10.1371/journal.pone.0158704. eCollection 2016.

5.

Rising levels of atmospheric oxygen and evolution of Nrf2.

Gacesa R, Dunlap WC, Barlow DJ, Laskowski RA, Long PF.

Sci Rep. 2016 Jun 14;6:27740. doi: 10.1038/srep27740.

6.

BetaSCPWeb: side-chain prediction for protein structures using Voronoi diagrams and geometry prioritization.

Ryu J, Lee M, Cha J, Laskowski RA, Ryu SE, Kim DS.

Nucleic Acids Res. 2016 Jul 8;44(W1):W416-23. doi: 10.1093/nar/gkw368. Epub 2016 May 5.

7.

Protein Structure Databases.

Laskowski RA.

Methods Mol Biol. 2016;1415:31-53. doi: 10.1007/978-1-4939-3572-7_2.

PMID:
27115626
8.

Large-Scale Quantitative Assessment of Binding Preferences in Protein-Nucleic Acid Complexes.

Jakubec D, Hostas J, Laskowski RA, Hobza P, Vondrásek J.

J Chem Theory Comput. 2015 Apr 14;11(4):1939-48.

PMID:
26894243
9.

Integrating population variation and protein structural analysis to improve clinical interpretation of missense variation: application to the WD40 domain.

Laskowski RA, Tyagi N, Johnson D, Joss S, Kinning E, McWilliam C, Splitt M, Thornton JM, Firth HV; DDD Study, Wright CF.

Hum Mol Genet. 2016 Mar 1;25(5):927-35. doi: 10.1093/hmg/ddv625. Epub 2016 Jan 5.

10.

Proteins: interaction at a distance.

Laskowski RA, Thornton JM.

IUCrJ. 2015 Oct 30;2(Pt 6):609-10. doi: 10.1107/S2052252515020217. eCollection 2015 Nov 1.

11.

Representative Amino Acid Side-Chain Interactions in Protein-DNA Complexes: A Comparison of Highly Accurate Correlated Ab Initio Quantum Mechanical Calculations and Efficient Approaches for Applications to Large Systems.

Hostaš J, Jakubec D, Laskowski RA, Gnanasekaran R, Řezáč J, Vondrášek J, Hobza P.

J Chem Theory Comput. 2015 Sep 8;11(9):4086-92. doi: 10.1021/acs.jctc.5b00398. Epub 2015 Aug 6.

PMID:
26575904
12.

Pathophysiology of Mild TBI: Implications for Altered Signaling Pathways.

Laskowski RA, Creed JA, Raghupathi R.

In: Kobeissy FH, editor. Brain Neurotrauma: Molecular, Neuropsychological, and Rehabilitation Aspects. Boca Raton (FL): CRC Press/Taylor & Francis; 2015. Chapter 4.

13.

BetaCavityWeb: a webserver for molecular voids and channels.

Kim JK, Cho Y, Lee M, Laskowski RA, Ryu SE, Sugihara K, Kim DS.

Nucleic Acids Res. 2015 Jul 1;43(W1):W413-8. doi: 10.1093/nar/gkv360. Epub 2015 Apr 22.

14.

Anatomy of enzyme channels.

Pravda L, Berka K, Svobodová Vařeková R, Sehnal D, Banáš P, Laskowski RA, Koča J, Otyepka M.

BMC Bioinformatics. 2014 Nov 18;15:379. doi: 10.1186/s12859-014-0379-x.

15.

CATH: comprehensive structural and functional annotations for genome sequences.

Sillitoe I, Lewis TE, Cuff A, Das S, Ashford P, Dawson NL, Furnham N, Laskowski RA, Lee D, Lees JG, Lehtinen S, Studer RA, Thornton J, Orengo CA.

Nucleic Acids Res. 2015 Jan;43(Database issue):D376-81. doi: 10.1093/nar/gku947. Epub 2014 Oct 27.

16.

BetaVoid: molecular voids via beta-complexes and Voronoi diagrams.

Kim JK, Cho Y, Laskowski RA, Ryu SE, Sugihara K, Kim DS.

Proteins. 2014 Sep;82(9):1829-49. doi: 10.1002/prot.24537. Epub 2014 Mar 20.

PMID:
24677176
17.

Amino acid changes in disease-associated variants differ radically from variants observed in the 1000 genomes project dataset.

de Beer TA, Laskowski RA, Parks SL, Sipos B, Goldman N, Thornton JM.

PLoS Comput Biol. 2013;9(12):e1003382. doi: 10.1371/journal.pcbi.1003382. Epub 2013 Dec 12.

18.

LigSearch: a knowledge-based web server to identify likely ligands for a protein target.

de Beer TA, Laskowski RA, Duban ME, Chan AW, Anderson WF, Thornton JM.

Acta Crystallogr D Biol Crystallogr. 2013 Dec;69(Pt 12):2395-402. doi: 10.1107/S0907444913022294. Epub 2013 Nov 19.

19.

PDBsum additions.

de Beer TA, Berka K, Thornton JM, Laskowski RA.

Nucleic Acids Res. 2014 Jan;42(Database issue):D292-6. doi: 10.1093/nar/gkt940. Epub 2013 Oct 22.

20.

Abstracting knowledge from the Protein Data Bank.

Furnham N, Laskowski RA, Thornton JM.

Biopolymers. 2013 Mar;99(3):183-8. doi: 10.1002/bip.22107. Epub 2012 Sep 29. Review.

PMID:
23023892

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