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Items: 1 to 20 of 38


SIRT6 Suppresses Cancer Stem-like Capacity in Tumors with PI3K Activation Independently of Its Deacetylase Activity.

Ioris RM, Galié M, Ramadori G, Anderson JG, Charollais A, Konstantinidou G, Brenachot X, Aras E, Goga A, Ceglia N, Sebastián C, Martinvalet D, Mostoslavsky R, Baldi P, Coppari R.

Cell Rep. 2017 Feb 21;18(8):1858-1868. doi: 10.1016/j.celrep.2017.01.065.


Lung Adenocarcinoma Distally Rewires Hepatic Circadian Homeostasis.

Masri S, Papagiannakopoulos T, Kinouchi K, Liu Y, Cervantes M, Baldi P, Jacks T, Sassone-Corsi P.

Cell. 2016 May 5;165(4):896-909. doi: 10.1016/j.cell.2016.04.039.


Metabolic changes associated with methionine stress sensitivity in MDA-MB-468 breast cancer cells.

Borrego SL, Fahrmann J, Datta R, Stringari C, Grapov D, Zeller M, Chen Y, Wang P, Baldi P, Gratton E, Fiehn O, Kaiser P.

Cancer Metab. 2016 May 2;4:9. doi: 10.1186/s40170-016-0148-6. eCollection 2016.


Accurate and efficient target prediction using a potency-sensitive influence-relevance voter.

Lusci A, Browning M, Fooshee D, Swamidass J, Baldi P.

J Cheminform. 2015 Dec 29;7:63. doi: 10.1186/s13321-015-0110-6. eCollection 2015.


The pervasiveness and plasticity of circadian oscillations: the coupled circadian-oscillators framework.

Patel VR, Ceglia N, Zeller M, Eckel-Mahan K, Sassone-Corsi P, Baldi P.

Bioinformatics. 2015 Oct 1;31(19):3181-8. doi: 10.1093/bioinformatics/btv353. Epub 2015 Jun 6.


A GRHL3-regulated repair pathway suppresses immune-mediated epidermal hyperplasia.

Gordon WM, Zeller MD, Klein RH, Swindell WR, Ho H, Espetia F, Gudjonsson JE, Baldi PF, Andersen B.

J Clin Invest. 2014 Dec;124(12):5205-18. doi: 10.1172/JCI77138. Epub 2014 Oct 27.


Partitioning circadian transcription by SIRT6 leads to segregated control of cellular metabolism.

Masri S, Rigor P, Cervantes M, Ceglia N, Sebastian C, Xiao C, Roqueta-Rivera M, Deng C, Osborne TF, Mostoslavsky R, Baldi P, Sassone-Corsi P.

Cell. 2014 Jul 31;158(3):659-72. doi: 10.1016/j.cell.2014.06.050.


Inter-species prediction of protein phosphorylation in the sbv IMPROVER species translation challenge.

Biehl M, Sadowski P, Bhanot G, Bilal E, Dayarian A, Meyer P, Norel R, Rhrissorrakrai K, Zeller MD, Hormoz S.

Bioinformatics. 2015 Feb 15;31(4):453-61. doi: 10.1093/bioinformatics/btu407. Epub 2014 Jul 3.


How pervasive are circadian oscillations?

Patel VR, Eckel-Mahan K, Sassone-Corsi P, Baldi P.

Trends Cell Biol. 2014 Jun;24(6):329-31. doi: 10.1016/j.tcb.2014.04.005. Epub 2014 May 2.


The Dropout Learning Algorithm.

Baldi P, Sadowski P.

Artif Intell. 2014 May;210:78-122.


Incorporating post-translational modifications and unnatural amino acids into high-throughput modeling of protein structures.

Nagata K, Randall A, Baldi P.

Bioinformatics. 2014 Jun 15;30(12):1681-9. doi: 10.1093/bioinformatics/btu106. Epub 2014 Feb 25.


Reprogramming of the circadian clock by nutritional challenge.

Eckel-Mahan KL, Patel VR, de Mateo S, Orozco-Solis R, Ceglia NJ, Sahar S, Dilag-Penilla SA, Dyar KA, Baldi P, Sassone-Corsi P.

Cell. 2013 Dec 19;155(7):1464-78. doi: 10.1016/j.cell.2013.11.034.


Small-molecule 3D structure prediction using open crystallography data.

Sadowski P, Baldi P.

J Chem Inf Model. 2013 Dec 23;53(12):3127-30. doi: 10.1021/ci4005282. Epub 2013 Dec 10.


Cycles in spatial and temporal chromosomal organization driven by the circadian clock.

Aguilar-Arnal L, Hakim O, Patel VR, Baldi P, Hager GL, Sassone-Corsi P.

Nat Struct Mol Biol. 2013 Oct;20(10):1206-13. doi: 10.1038/nsmb.2667. Epub 2013 Sep 22.


Leptin engages a hypothalamic neurocircuitry to permit survival in the absence of insulin.

Fujikawa T, Berglund ED, Patel VR, Ramadori G, Vianna CR, Vong L, Thorel F, Chera S, Herrera PL, Lowell BB, Elmquist JK, Baldi P, Coppari R.

Cell Metab. 2013 Sep 3;18(3):431-44. doi: 10.1016/j.cmet.2013.08.004.


Combining docking site and phosphosite predictions to find new substrates: identification of smoothelin-like-2 (SMTNL2) as a c-Jun N-terminal kinase (JNK) substrate.

Gordon EA, Whisenant TC, Zeller M, Kaake RM, Gordon WM, Krotee P, Patel V, Huang L, Baldi P, Bardwell L.

Cell Signal. 2013 Dec;25(12):2518-29. doi: 10.1016/j.cellsig.2013.08.004. Epub 2013 Aug 24.


A 3-dimensional trimeric β-barrel model for Chlamydia MOMP contains conserved and novel elements of Gram-negative bacterial porins.

Feher VA, Randall A, Baldi P, Bush RM, de la Maza LM, Amaro RE.

PLoS One. 2013 Jul 25;8(7):e68934. doi: 10.1371/journal.pone.0068934. Print 2013.


Deep architectures and deep learning in chemoinformatics: the prediction of aqueous solubility for drug-like molecules.

Lusci A, Pollastri G, Baldi P.

J Chem Inf Model. 2013 Jul 22;53(7):1563-75. doi: 10.1021/ci400187y. Epub 2013 Jul 2.

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