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Items: 15

1.

Sequences flanking hypersensitive sites of the beta-globin locus control region are required for synergistic enhancement.

Molete JM, Petrykowska H, Bouhassira EE, Feng YQ, Miller W, Hardison RC.

Mol Cell Biol. 2001 May;21(9):2969-80.

2.

Comparative analysis of the gene-dense ACHE/TFR2 region on human chromosome 7q22 with the orthologous region on mouse chromosome 5.

Wilson MD, Riemer C, Martindale DW, Schnupf P, Boright AP, Cheung TL, Hardy DM, Schwartz S, Scherer SW, Tsui LC, Miller W, Koop BF.

Nucleic Acids Res. 2001 Mar 15;29(6):1352-65.

3.

Web-based visualization tools for bacterial genome alignments.

Florea L, Riemer C, Schwartz S, Zhang Z, Stojanovic N, Miller W, McClelland M.

Nucleic Acids Res. 2000 Sep 15;28(18):3486-96.

4.

PipMaker--a web server for aligning two genomic DNA sequences.

Schwartz S, Zhang Z, Frazer KA, Smit A, Riemer C, Bouck J, Gibbs R, Hardison R, Miller W.

Genome Res. 2000 Apr;10(4):577-86.

5.

Comparative genomic sequence analysis of the human and mouse cystic fibrosis transmembrane conductance regulator genes.

Ellsworth RE, Jamison DC, Touchman JW, Chissoe SL, Braden Maduro VV, Bouffard GG, Dietrich NL, Beckstrom-Sternberg SM, Iyer LM, Weintraub LA, Cotton M, Courtney L, Edwards J, Maupin R, Ozersky P, Rohlfing T, Wohldmann P, Miner T, Kemp K, Kramer J, Korf I, Pepin K, Antonacci-Fulton L, Fulton RS, Minx P, Hillier LW, Wilson RK, Waterston RH, Miller W, Green ED.

Proc Natl Acad Sci U S A. 2000 Feb 1;97(3):1172-7.

6.

Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three salmonella enterica serovars, Typhimurium, Typhi and Paratyphi.

McClelland M, Florea L, Sanderson K, Clifton SW, Parkhill J, Churcher C, Dougan G, Wilson RK, Miller W.

Nucleic Acids Res. 2000 Dec 15;28(24):4974-86.

7.

Comparison of five methods for finding conserved sequences in multiple alignments of gene regulatory regions.

Stojanovic N, Florea L, Riemer C, Gumucio D, Slightom J, Goodman M, Miller W, Hardison R.

Nucleic Acids Res. 1999 Oct 1;27(19):3899-910.

8.

Comparative sequence of human and mouse BAC clones from the mnd2 region of chromosome 2p13.

Jang W, Hua A, Spilson SV, Miller W, Roe BA, Meisler MH.

Genome Res. 1999 Jan;9(1):53-61.

9.

Analysis of the quality and utility of random shotgun sequencing at low redundancies.

Bouck J, Miller W, Gorrell JH, Muzny D, Gibbs RA.

Genome Res. 1998 Oct;8(10):1074-84.

10.

A computer program for aligning a cDNA sequence with a genomic DNA sequence.

Florea L, Hartzell G, Zhang Z, Rubin GM, Miller W.

Genome Res. 1998 Sep;8(9):967-74.

11.
12.

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ.

Nucleic Acids Res. 1997 Sep 1;25(17):3389-402. Review.

14.

Software tools for analyzing pairwise alignments of long sequences.

Schwartz S, Miller W, Yang CM, Hardison RC.

Nucleic Acids Res. 1991 Sep 11;19(17):4663-7.

15.

Mapping sequenced E.coli genes by computer: software, strategies and examples.

Rudd KE, Miller W, Werner C, Ostell J, Tolstoshev C, Satterfield SG.

Nucleic Acids Res. 1991 Feb 11;19(3):637-47.

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