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Items: 1 to 20 of 36

1.

Split Scores: A Tool to Quantify Phylogenetic Signal in Genome-Scale Data.

Allman ES, Kubatko LS, Rhodes JA.

Syst Biol. 2016 Nov 14. pii: syw103. doi: 10.1093/sysbio/syw103. [Epub ahead of print]

PMID:
28123114
2.

Tree-based quantitative trait mapping in the presence of external covariates.

Thompson KL, Linnen CR, Kubatko L.

Stat Appl Genet Mol Biol. 2016 Dec 1;15(6):473-490. doi: 10.1515/sagmb-2015-0107.

PMID:
27875322
3.

Cassava brown streak virus has a rapidly evolving genome: implications for virus speciation, variability, diagnosis and host resistance.

Alicai T, Ndunguru J, Sseruwagi P, Tairo F, Okao-Okuja G, Nanvubya R, Kiiza L, Kubatko L, Kehoe MA, Boykin LM.

Sci Rep. 2016 Nov 3;6:36164. doi: 10.1038/srep36164.

4.

Expected pairwise congruence among gene trees under the coalescent model.

Tian Y, Kubatko LS.

Mol Phylogenet Evol. 2017 Jan;106:144-150. doi: 10.1016/j.ympev.2016.09.023. Epub 2016 Oct 4.

PMID:
27693467
5.

Distribution of coalescent histories under the coalescent model with gene flow.

Tian Y, Kubatko LS.

Mol Phylogenet Evol. 2016 Dec;105:177-92. doi: 10.1016/j.ympev.2016.08.024. Epub 2016 Sep 7.

PMID:
27614251
6.

Hypothesis tests for phylogenetic quartets, with applications to coalescent-based species tree inference.

Gaither J, Kubatko L.

J Theor Biol. 2016 Nov 7;408:179-86. doi: 10.1016/j.jtbi.2016.08.013. Epub 2016 Aug 11.

PMID:
27521524
7.

Accounting for genotype uncertainty in the estimation of allele frequencies in autopolyploids.

Blischak PD, Kubatko LS, Wolfe AD.

Mol Ecol Resour. 2016 May;16(3):742-54. doi: 10.1111/1755-0998.12493. Epub 2015 Dec 21.

PMID:
26607217
8.

A codon model of nucleotide substitution with selection on synonymous codon usage.

Kubatko L, Shah P, Herbei R, Gilchrist MA.

Mol Phylogenet Evol. 2016 Jan;94(Pt A):290-7. doi: 10.1016/j.ympev.2015.08.026. Epub 2015 Sep 8.

PMID:
26358614
9.

Geometric ergodicity of a hybrid sampler for Bayesian inference of phylogenetic branch lengths.

Spade DA, Herbei R, Kubatko LS.

Math Biosci. 2015 Oct;268:9-21. doi: 10.1016/j.mbs.2015.07.002. Epub 2015 Aug 7.

PMID:
26256054
10.
11.

Quartet inference from SNP data under the coalescent model.

Chifman J, Kubatko L.

Bioinformatics. 2014 Dec 1;30(23):3317-24. doi: 10.1093/bioinformatics/btu530. Epub 2014 Aug 7.

12.

The effects of locus number, genetic divergence, and genotyping error on the utility of dominant markers for hybrid identification.

Sovic MG, Kubatko LS, Fuerst PA.

Ecol Evol. 2014 Feb;4(4):462-73. doi: 10.1002/ece3.833. Epub 2014 Jan 22.

13.

Gene tree rooting methods give distributions that mimic the coalescent process.

Tian Y, Kubatko LS.

Mol Phylogenet Evol. 2014 Jan;70:63-9. doi: 10.1016/j.ympev.2013.09.004. Epub 2013 Sep 18.

PMID:
24055603
14.

Using ancestral information to detect and localize quantitative trait loci in genome-wide association studies.

Thompson KL, Kubatko LS.

BMC Bioinformatics. 2013 Jun 20;14:200. doi: 10.1186/1471-2105-14-200.

15.

Effects of missing data on species tree estimation under the coalescent.

Hovmöller R, Knowles LL, Kubatko LS.

Mol Phylogenet Evol. 2013 Dec;69(3):1057-62. doi: 10.1016/j.ympev.2013.06.004. Epub 2013 Jun 13.

PMID:
23769751
16.

Monte Carlo estimation of total variation distance of Markov chains on large spaces, with application to phylogenetics.

Herbei R, Kubatko L.

Stat Appl Genet Mol Biol. 2013 Mar 26;12(1):39-48. doi: 10.1515/sagmb-2012-0023.

PMID:
23459470
17.

Letter to the editor on the article entitled "Estimating species trees using Approximate Bayesian Computation" (Fan and Kubatko, Mol. Phylogenetics Evol. 59, 354-363).

Kubatko LS, Fan HH.

Mol Phylogenet Evol. 2013 Jan;66(1):438-9. doi: 10.1016/j.ympev.2012.10.003. Epub 2012 Oct 10. No abstract available.

PMID:
23063884
18.

Species delimitation and global biosecurity.

Boykin LM, Armstrong KF, Kubatko L, De Barro P.

Evol Bioinform Online. 2012;8:1-37. doi: 10.4137/EBO.S8532. Epub 2011 Dec 8.

19.

Estimating hybridization in the presence of coalescence using phylogenetic intraspecific sampling.

Gerard D, Gibbs HL, Kubatko L.

BMC Evol Biol. 2011 Oct 6;11:291. doi: 10.1186/1471-2148-11-291.

20.

Evolution. Seeing the trees in your terrace.

Kubatko LS, Pearl DK.

Science. 2011 Jul 22;333(6041):411-2. doi: 10.1126/science.1209690. No abstract available.

PMID:
21778387

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