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Items: 1 to 20 of 56

1.

NMR reveals the absence of hydrogen bonding in adjacent UU and AG mismatches in an isolated internal loop from ribosomal RNA.

Shankar N, Xia T, Kennedy SD, Krugh TR, Mathews DH, Turner DH.

Biochemistry. 2007 Nov 6;46(44):12665-78. Epub 2007 Oct 11.

PMID:
17929882
2.

Stacking effects on local structure in RNA: changes in the structure of tandem GA pairs when flanking GC pairs are replaced by isoG-isoC pairs.

Chen G, Kierzek R, Yildirim I, Krugh TR, Turner DH, Kennedy SD.

J Phys Chem B. 2007 Jun 21;111(24):6718-27. Epub 2007 Apr 6.

3.

NMR structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2: probing the structural features that shape the thermodynamic stability of GA pairs.

Tolbert BS, Kennedy SD, Schroeder SJ, Krugh TR, Turner DH.

Biochemistry. 2007 Feb 13;46(6):1511-22. Epub 2007 Jan 20.

4.

The NMR structure of an internal loop from 23S ribosomal RNA differs from its structure in crystals of 50s ribosomal subunits.

Shankar N, Kennedy SD, Chen G, Krugh TR, Turner DH.

Biochemistry. 2006 Oct 3;45(39):11776-89.

5.
6.

Solution structure of an RNA internal loop with three consecutive sheared GA pairs.

Chen G, Znosko BM, Kennedy SD, Krugh TR, Turner DH.

Biochemistry. 2005 Mar 1;44(8):2845-56.

PMID:
15723528
7.

Structural features and thermodynamics of the J4/5 loop from the Candida albicans and Candida dubliniensis group I introns.

Znosko BM, Kennedy SD, Wille PC, Krugh TR, Turner DH.

Biochemistry. 2004 Dec 21;43(50):15822-37.

PMID:
15595837
8.

Thermodynamic stability and structural features of the J4/5 loop in a Pneumocystis carinii group I intron.

Schroeder SJ, Fountain MA, Kennedy SD, Lukavsky PJ, Puglisi JD, Krugh TR, Turner DH.

Biochemistry. 2003 Dec 9;42(48):14184-96.

PMID:
14640686
9.

NMR studies of DNA single strands and DNA:RNA hybrids with and without 1-propynylation at C5 of oligopyrimidines.

Znosko BM, Barnes TW 3rd, Krugh TR, Turner DH.

J Am Chem Soc. 2003 May 21;125(20):6090-7.

PMID:
12785839
10.
11.

Sheared Aanti.Aanti base pairs in a destabilizing 2 x 2 internal loop: the NMR structure of 5'(rGGCAAGCCU)2.

Znosko BM, Burkard ME, Schroeder SJ, Krugh TR, Turner DH.

Biochemistry. 2002 Dec 17;41(50):14969-77.

PMID:
12475246
12.

Structural characterization of a six-nucleotide RNA hairpin loop found in Escherichia coli, r(UUAAGU).

Zhang H, Fountain MA, Krugh TR.

Biochemistry. 2001 Aug 21;40(33):9879-86.

PMID:
11502181
14.

Solution Structure of a Nonpolar, Non-Hydrogen-Bonded Base Pair Surrogate in DNA.

Guckian KM, Krugh TR, Kool ET.

J Am Chem Soc. 2000 Jul 26;122(29):6841-6847.

15.

Solution structure of a DNA duplex containing a replicable difluorotoluene-adenine pair.

Guckian KM, Krugh TR, Kool ET.

Nat Struct Biol. 1998 Nov;5(11):954-9.

PMID:
9808039
16.

Structural features of a six-nucleotide RNA hairpin loop found in ribosomal RNA.

Fountain MA, Serra MJ, Krugh TR, Turner DH.

Biochemistry. 1996 May 28;35(21):6539-48.

PMID:
8639602
19.

2-Aminofluorene modified DNA duplex exists in two interchangeable conformations.

Eckel LM, Krugh TR.

Nat Struct Biol. 1994 Feb;1(2):89-94.

PMID:
7656023
20.

Structural characterization of an N-acetyl-2-aminofluorene (AAF) modified DNA oligomer by NMR, energy minimization, and molecular dynamics.

O'Handley SF, Sanford DG, Xu R, Lester CC, Hingerty BE, Broyde S, Krugh TR.

Biochemistry. 1993 Mar 16;32(10):2481-97.

PMID:
8448107

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