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Items: 20


A Computational Model of the Rainbow Trout Hypothalamus-Pituitary-Ovary-Liver Axis.

Gillies K, Krone SM, Nagler JJ, Schultz IR.

PLoS Comput Biol. 2016 Apr 20;12(4):e1004874. doi: 10.1371/journal.pcbi.1004874. eCollection 2016 Apr.


Models for the directed evolution of bacterial allelopathy: bacteriophage lysins.

Bull JJ, Crandall C, Rodriguez A, Krone SM.

PeerJ. 2015 Apr 9;3:e879. doi: 10.7717/peerj.879. eCollection 2015.


The impact of spatial structure on viral genomic diversity generated during adaptation to thermal stress.

Ally D, Wiss VR, Deckert GE, Green D, Roychoudhury P, Wichman HA, Brown CJ, Krone SM.

PLoS One. 2014 Feb 12;9(2):e88702. doi: 10.1371/journal.pone.0088702. eCollection 2014.


Fitness benefits of low infectivity in a spatially structured population of bacteriophages.

Roychoudhury P, Shrestha N, Wiss VR, Krone SM.

Proc Biol Sci. 2014 Jan 7;281(1774):20132563. doi: 10.1098/rspb.2013.2563.


Influence of humans on evolution and mobilization of environmental antibiotic resistome.

Gaze WH, Krone SM, Larsson DG, Li XZ, Robinson JA, Simonet P, Smalla K, Timinouni M, Topp E, Wellington EM, Wright GD, Zhu YG.

Emerg Infect Dis. 2013 Jul;19(7). doi: 10.3201/eid1907.120871.


Invasion of E. coli biofilms by antibiotic resistance plasmids.

Król JE, Wojtowicz AJ, Rogers LM, Heuer H, Smalla K, Krone SM, Top EM.

Plasmid. 2013 Jul;70(1):110-9. doi: 10.1016/j.plasmid.2013.03.003. Epub 2013 Apr 2.


Adaptive regulatory substitutions affect multiple stages in the life cycle of the bacteriophage φX174.

Brown CJ, Stancik AD, Roychoudhury P, Krone SM.

BMC Evol Biol. 2013 Mar 18;13:66. doi: 10.1186/1471-2148-13-66.


On the meaning and estimation of plasmid transfer rates for surface-associated and well-mixed bacterial populations.

Zhong X, Droesch J, Fox R, Top EM, Krone SM.

J Theor Biol. 2012 Feb 7;294:144-52. doi: 10.1016/j.jtbi.2011.10.034. Epub 2011 Nov 9.


Increased transfer of a multidrug resistance plasmid in Escherichia coli biofilms at the air-liquid interface.

Król JE, Nguyen HD, Rogers LM, Beyenal H, Krone SM, Top EM.

Appl Environ Microbiol. 2011 Aug;77(15):5079-88. doi: 10.1128/AEM.00090-11. Epub 2011 Jun 3.


Dual reporter system for in situ detection of plasmid transfer under aerobic and anaerobic conditions.

Król JE, Rogers LM, Krone SM, Top EM.

Appl Environ Microbiol. 2010 Jul;76(13):4553-6. doi: 10.1128/AEM.00226-10. Epub 2010 May 7.


Accounting for mating pair formation in plasmid population dynamics.

Zhong X, Krol JE, Top EM, Krone SM.

J Theor Biol. 2010 Feb 21;262(4):711-9. doi: 10.1016/j.jtbi.2009.10.013. Epub 2009 Oct 14.


Space, time, and host evolution facilitate coexistence of competing bacteriophages: theory and experiment.

Coberly LC, Wei W, Sampson KY, Millstein J, Wichman HA, Krone SM.

Am Nat. 2009 Apr;173(4):E121-38. doi: 10.1086/597226.


Spatial structure and nutrients promote invasion of IncP-1 plasmids in bacterial populations.

Fox RE, Zhong X, Krone SM, Top EM.

ISME J. 2008 Oct;2(10):1024-39. doi: 10.1038/ismej.2008.53. Epub 2008 Jun 5.


Application of ecological network theory to the human microbiome.

Foster JA, Krone SM, Forney LJ.

Interdiscip Perspect Infect Dis. 2008;2008:839501. doi: 10.1155/2008/839501. Epub 2008 Oct 29.


Analyzing animal movements using Brownian bridges.

Horne JS, Garton EO, Krone SM, Lewis JS.

Ecology. 2007 Sep;88(9):2354-63.


Modelling the spatial dynamics of plasmid transfer and persistence.

Krone SM, Lu R, Fox R, Suzuki H, Top EM.

Microbiology. 2007 Aug;153(Pt 8):2803-16.


Spatial self-organization in a cyclic resource-species model.

Krone SM, Guan Y.

J Theor Biol. 2006 Jul 7;241(1):14-25. Epub 2005 Dec 19.


Spatial invasion by a mutant pathogen.

Wei W, Krone SM.

J Theor Biol. 2005 Oct 7;236(3):335-48.


Ancestral Processes with Selection

Krone SM, Neuhauser C.

Theor Popul Biol. 1997 Jun;51(3):210-37.


The genealogy of samples in models with selection.

Neuhauser C, Krone SM.

Genetics. 1997 Feb;145(2):519-34.

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