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Items: 1 to 20 of 33

1.

Inference in population genetics using forward and backward, discrete and continuous time processes.

Bergman J, Schrempf D, Kosiol C, Vogl C.

J Theor Biol. 2018 Feb 14;439:166-180. doi: 10.1016/j.jtbi.2017.12.008. Epub 2017 Dec 9.

PMID:
29229523
2.

Approximate maximum likelihood estimation for population genetic inference.

Bertl J, Ewing G, Kosiol C, Futschik A.

Stat Appl Genet Mol Biol. 2017 Nov 27;16(5-6):387-405. doi: 10.1515/sagmb-2017-0016.

PMID:
29095700
3.

Adaptive sequence evolution is driven by biotic stress in a pair of orchid species (Dactylorhiza) with distinct ecological optima.

Balao F, Trucchi E, Wolfe TM, Hao BH, Lorenzo MT, Baar J, Sedman L, Kosiol C, Amman F, Chase MW, Hedrén M, Paun O.

Mol Ecol. 2017 Jul;26(14):3649-3662. doi: 10.1111/mec.14123. Epub 2017 Apr 27.

4.

Estimating the Effective Population Size from Temporal Allele Frequency Changes in Experimental Evolution.

Jónás Á, Taus T, Kosiol C, Schlötterer C, Futschik A.

Genetics. 2016 Oct;204(2):723-735. Epub 2016 Aug 19.

5.

Reversible polymorphism-aware phylogenetic models and their application to tree inference.

Schrempf D, Minh BQ, De Maio N, von Haeseler A, Kosiol C.

J Theor Biol. 2016 Oct 21;407:362-370. doi: 10.1016/j.jtbi.2016.07.042. Epub 2016 Jul 29.

6.

Genetic diversity of species Fowl aviadenovirus D and Fowl aviadenovirus E.

Marek A, Kaján GL, Kosiol C, Benkő M, Schachner A, Hess M.

J Gen Virol. 2016 Sep;97(9):2323-32. doi: 10.1099/jgv.0.000519. Epub 2016 Jun 6.

PMID:
27267884
7.

PoMo: An Allele Frequency-Based Approach for Species Tree Estimation.

De Maio N, Schrempf D, Kosiol C.

Syst Biol. 2015 Nov;64(6):1018-31. doi: 10.1093/sysbio/syv048. Epub 2015 Jul 23.

8.

Gaussian process test for high-throughput sequencing time series: application to experimental evolution.

Topa H, Jónás Á, Kofler R, Kosiol C, Honkela A.

Bioinformatics. 2015 Jun 1;31(11):1762-70. doi: 10.1093/bioinformatics/btv014. Epub 2015 Jan 21.

9.

Complete genome sequences of pigeon adenovirus 1 and duck adenovirus 2 extend the number of species within the genus Aviadenovirus.

Marek A, Kaján GL, Kosiol C, Harrach B, Schlötterer C, Hess M.

Virology. 2014 Aug;462-463:107-14. doi: 10.1016/j.virol.2014.04.033. Epub 2014 Jun 25.

10.

The life cycle of Drosophila orphan genes.

Palmieri N, Kosiol C, Schlötterer C.

Elife. 2014 Feb 19;3:e01311. doi: 10.7554/eLife.01311.

11.

Population genomic analysis reveals a rich speciation and demographic history of orang-utans (Pongo pygmaeus and Pongo abelii).

Ma X, Kelley JL, Eilertson K, Musharoff S, Degenhardt JD, Martins AL, Vinar T, Kosiol C, Siepel A, Gutenkunst RN, Bustamante CD.

PLoS One. 2013 Oct 23;8(10):e77175. doi: 10.1371/journal.pone.0077175. eCollection 2013.

12.

Whole-genome sequences of two turkey adenovirus types reveal the existence of two unknown lineages that merit the establishment of novel species within the genus Aviadenovirus.

Marek A, Ballmann MZ, Kosiol C, Harrach B, Schlötterer C, Hess M.

J Gen Virol. 2014 Jan;95(Pt 1):156-70. doi: 10.1099/vir.0.057711-0. Epub 2013 Sep 28.

PMID:
24077297
13.

Linking great apes genome evolution across time scales using polymorphism-aware phylogenetic models.

De Maio N, Schlötterer C, Kosiol C.

Mol Biol Evol. 2013 Oct;30(10):2249-62. doi: 10.1093/molbev/mst131. Epub 2013 Aug 1.

14.

The first whole genome sequence of a Fowl adenovirus B strain enables interspecies comparisons within the genus Aviadenovirus.

Marek A, Kosiol C, Harrach B, Kaján GL, Schlötterer C, Hess M.

Vet Microbiol. 2013 Sep 27;166(1-2):250-6. doi: 10.1016/j.vetmic.2013.05.017. Epub 2013 Jun 14.

PMID:
23830773
15.

Estimating empirical codon hidden Markov models.

De Maio N, Holmes I, Schlötterer C, Kosiol C.

Mol Biol Evol. 2013 Mar;30(3):725-36. doi: 10.1093/molbev/mss266. Epub 2012 Nov 27.

16.

Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura.

Palmieri N, Nolte V, Suvorov A, Kosiol C, Schlötterer C.

PLoS One. 2012;7(10):e46415. doi: 10.1371/journal.pone.0046415. Epub 2012 Oct 3.

17.

Selection on the protein-coding genome.

Kosiol C, Anisimova M.

Methods Mol Biol. 2012;856:113-40. doi: 10.1007/978-1-61779-585-5_5.

PMID:
22399457
18.

Markovian and non-Markovian protein sequence evolution: aggregated Markov process models.

Kosiol C, Goldman N.

J Mol Biol. 2011 Aug 26;411(4):910-23. doi: 10.1016/j.jmb.2011.06.005. Epub 2011 Jun 21.

19.

Comparative and demographic analysis of orang-utan genomes.

Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, Fulton LA, Fulton RS, Nelson JO, Magrini V, Pohl C, Graves TA, Markovic C, Cree A, Dinh HH, Hume J, Kovar CL, Fowler GR, Lunter G, Meader S, Heger A, Ponting CP, Marques-Bonet T, Alkan C, Chen L, Cheng Z, Kidd JM, Eichler EE, White S, Searle S, Vilella AJ, Chen Y, Flicek P, Ma J, Raney B, Suh B, Burhans R, Herrero J, Haussler D, Faria R, Fernando O, Darré F, Farré D, Gazave E, Oliva M, Navarro A, Roberto R, Capozzi O, Archidiacono N, Della Valle G, Purgato S, Rocchi M, Konkel MK, Walker JA, Ullmer B, Batzer MA, Smit AF, Hubley R, Casola C, Schrider DR, Hahn MW, Quesada V, Puente XS, Ordoñez GR, López-Otín C, Vinar T, Brejova B, Ratan A, Harris RS, Miller W, Kosiol C, Lawson HA, Taliwal V, Martins AL, Siepel A, Roychoudhury A, Ma X, Degenhardt J, Bustamante CD, Gutenkunst RN, Mailund T, Dutheil JY, Hobolth A, Schierup MH, Ryder OA, Yoshinaga Y, de Jong PJ, Weinstock GM, Rogers J, Mardis ER, Gibbs RA, Wilson RK.

Nature. 2011 Jan 27;469(7331):529-33. doi: 10.1038/nature09687.

20.

PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals.

Kofler R, Orozco-terWengel P, De Maio N, Pandey RV, Nolte V, Futschik A, Kosiol C, Schlötterer C.

PLoS One. 2011 Jan 6;6(1):e15925. doi: 10.1371/journal.pone.0015925.

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