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Items: 16

1.

Reconstruction of the ancestral marsupial karyotype from comparative gene maps.

Deakin JE, Delbridge ML, Koina E, Harley N, Alsop AE, Wang C, Patel VS, Graves JA.

BMC Evol Biol. 2013 Nov 21;13:258. doi: 10.1186/1471-2148-13-258.

2.

Evolution from XIST-independent to XIST-controlled X-chromosome inactivation: epigenetic modifications in distantly related mammals.

Chaumeil J, Waters PD, Koina E, Gilbert C, Robinson TJ, Graves JA.

PLoS One. 2011 Apr 25;6(4):e19040. doi: 10.1371/journal.pone.0019040.

3.

Activity map of the tammar X chromosome shows that marsupial X inactivation is incomplete and escape is stochastic.

Al Nadaf S, Waters PD, Koina E, Deakin JE, Jordan KS, Graves JA.

Genome Biol. 2010;11(12):R122. doi: 10.1186/gb-2010-11-12-r122. Epub 2010 Dec 23.

4.

Specific patterns of histone marks accompany X chromosome inactivation in a marsupial.

Koina E, Chaumeil J, Greaves IK, Tremethick DJ, Graves JA.

Chromosome Res. 2009;17(1):115-26. doi: 10.1007/s10577-009-9020-7. Epub 2009 Feb 13.

PMID:
19214764
5.

Physical map of two tammar wallaby chromosomes: a strategy for mapping in non-model mammals.

Deakin JE, Koina E, Waters PD, Doherty R, Patel VS, Delbridge ML, Dobson B, Fong J, Hu Y, van den Hurk C, Pask AJ, Shaw G, Smith C, Thompson K, Wakefield MJ, Yu H, Renfree MB, Graves JA.

Chromosome Res. 2008;16(8):1159-75. doi: 10.1007/s10577-008-1266-y. Epub 2008 Nov 8.

PMID:
18987984
6.

Marsupial and monotreme genomes.

Koina E, Fong J, Graves JA.

Genome Dyn. 2006;2:111-22. doi: 10.1159/000095099. Review.

PMID:
18753774
7.

The status of dosage compensation in the multiple X chromosomes of the platypus.

Deakin JE, Hore TA, Koina E, Marshall Graves JA.

PLoS Genet. 2008 Jul 25;4(7):e1000140. doi: 10.1371/journal.pgen.1000140.

8.

Core-SINE blocks comprise a large fraction of monotreme genomes; implications for vertebrate chromosome evolution.

Kirby PJ, Greaves IK, Koina E, Waters PD, Marshall Graves JA.

Chromosome Res. 2007;15(8):975-84. doi: 10.1007/s10577-007-1187-1. Epub 2008 Jan 9.

PMID:
18185983
9.

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences.

Mikkelsen TS, Wakefield MJ, Aken B, Amemiya CT, Chang JL, Duke S, Garber M, Gentles AJ, Goodstadt L, Heger A, Jurka J, Kamal M, Mauceli E, Searle SM, Sharpe T, Baker ML, Batzer MA, Benos PV, Belov K, Clamp M, Cook A, Cuff J, Das R, Davidow L, Deakin JE, Fazzari MJ, Glass JL, Grabherr M, Greally JM, Gu W, Hore TA, Huttley GA, Kleber M, Jirtle RL, Koina E, Lee JT, Mahony S, Marra MA, Miller RD, Nicholls RD, Oda M, Papenfuss AT, Parra ZE, Pollock DD, Ray DA, Schein JE, Speed TP, Thompson K, VandeBerg JL, Wade CM, Walker JA, Waters PD, Webber C, Weidman JR, Xie X, Zody MC; Broad Institute Genome Sequencing Platform; Broad Institute Whole Genome Assembly Team, Graves JA, Ponting CP, Breen M, Samollow PB, Lander ES, Lindblad-Toh K.

Nature. 2007 May 10;447(7141):167-77.

PMID:
17495919
10.

The region homologous to the X-chromosome inactivation centre has been disrupted in marsupial and monotreme mammals.

Hore TA, Koina E, Wakefield MJ, Marshall Graves JA.

Chromosome Res. 2007;15(2):147-61. Epub 2007 Mar 5.

PMID:
17333539
11.
12.

How the gene content of human sex chromosomes evolved.

Graves JA, Koina E, Sankovic N.

Curr Opin Genet Dev. 2006 Jun;16(3):219-24. Epub 2006 May 2. Review.

PMID:
16650758
13.

Isolation, X location and activity of the marsupial homologue of SLC16A2, an XIST-flanking gene in eutherian mammals.

Koina E, Wakefield MJ, Walcher C, Disteche CM, Whitehead S, Ross M, Marshall Graves JA.

Chromosome Res. 2005;13(7):687-98. Epub 2005 Oct 24.

14.

Characterizing the chromosomes of the Australian model marsupial Macropus eugenii (tammar wallaby).

Alsop AE, Miethke P, Rofe R, Koina E, Sankovic N, Deakin JE, Haines H, Rapkins RW, Marshall Graves JA.

Chromosome Res. 2005;13(6):627-36. Epub 2005 Sep 21.

PMID:
16170627
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