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Molecular and genetic characterization of barley mutants and genetic mapping of mutant rpr2 required for Rpg1-mediated resistance against stem rust.

Gill U, Brueggeman R, Nirmala J, Chai Y, Steffenson B, Kleinhofs A.

Theor Appl Genet. 2016 Aug;129(8):1519-29. doi: 10.1007/s00122-016-2721-3.


Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.

Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson JT, Moscou MJ, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer GJ, Wise RP, Stein N, Ma Y, Rodriguez E, Kudrna D, Bhat PR, Chao S, Condamine P, Heinen S, Resnik J, Wing R, Witt HN, Alpert M, Beccuti M, Bozdag S, Cordero F, Mirebrahim H, Ounit R, Wu Y, You F, Zheng J, Simková H, Dolezel J, Grimwood J, Schmutz J, Duma D, Altschmied L, Blake T, Bregitzer P, Cooper L, Dilbirligi M, Falk A, Feiz L, Graner A, Gustafson P, Hayes PM, Lemaux P, Mammadov J, Close TJ.

Plant J. 2015 Oct;84(1):216-27. doi: 10.1111/tpj.12959.


The rpg4-mediated resistance to wheat stem rust (Puccinia graminis) in barley (Hordeum vulgare) requires Rpg5, a second NBS-LRR gene, and an actin depolymerization factor.

Wang X, Richards J, Gross T, Druka A, Kleinhofs A, Steffenson B, Acevedo M, Brueggeman R.

Mol Plant Microbe Interact. 2013 Apr;26(4):407-18. doi: 10.1094/MPMI-06-12-0146-R.


Concerted action of two avirulent spore effectors activates Reaction to Puccinia graminis 1 (Rpg1)-mediated cereal stem rust resistance.

Nirmala J, Drader T, Lawrence PK, Yin C, Hulbert S, Steber CM, Steffenson BJ, Szabo LJ, von Wettstein D, Kleinhofs A.

Proc Natl Acad Sci U S A. 2011 Aug 30;108(35):14676-81. doi: 10.1073/pnas.1111771108.


Polymorphic nuclear gene sequences indicate a novel genome donor in the polyploid genus Thinopyrum.

Arterburn M, Kleinhofs A, Murray T, Jones S.

Hereditas. 2011 Feb;148(1):8-27. doi: 10.1111/j.1601-5223.2010.02084.x.


Stem rust spores elicit rapid RPG1 phosphorylation.

Nirmala J, Drader T, Chen X, Steffenson B, Kleinhofs A.

Mol Plant Microbe Interact. 2010 Dec;23(12):1635-42. doi: 10.1094/MPMI-06-10-0136.


A synteny map and disease resistance gene comparison between barley and the model monocot Brachypodium distachyon.

Drader T, Kleinhofs A.

Genome. 2010 May;53(5):406-17. doi: 10.1139/g10-014.


Development and implementation of high-throughput SNP genotyping in barley.

Close TJ, Bhat PR, Lonardi S, Wu Y, Rostoks N, Ramsay L, Druka A, Stein N, Svensson JT, Wanamaker S, Bozdag S, Roose ML, Moscou MJ, Chao S, Varshney RK, Szucs P, Sato K, Hayes PM, Matthews DE, Kleinhofs A, Muehlbauer GJ, DeYoung J, Marshall DF, Madishetty K, Fenton RD, Condamine P, Graner A, Waugh R.

BMC Genomics. 2009 Dec 4;10:582. doi: 10.1186/1471-2164-10-582.


Resistance to stem rust race TTKSK maps to the rpg4/Rpg5 complex of chromosome 5H of barley.

Steffenson BJ, Jin Y, Brueggeman RS, Kleinhofs A, Sun Y.

Phytopathology. 2009 Oct;99(10):1135-41. doi: 10.1094/PHYTO-99-10-1135.


The rpg4/Rpg5 stem rust resistance locus in barley: resistance genes and cytoskeleton dynamics.

Brueggeman R, Steffenson BJ, Kleinhofs A.

Cell Cycle. 2009 Apr 1;8(7):977-81.


Genetic and physical mapping of a high recombination region on chromosome 7H(1) in barley.

Drader T, Johnson K, Brueggeman R, Kudrna D, Kleinhofs A.

Theor Appl Genet. 2009 Feb;118(4):811-20. doi: 10.1007/s00122-008-0941-x.


Towards systems genetic analyses in barley: Integration of phenotypic, expression and genotype data into GeneNetwork.

Druka A, Druka I, Centeno AG, Li H, Sun Z, Thomas WT, Bonar N, Steffenson BJ, Ullrich SE, Kleinhofs A, Wise RP, Close TJ, Potokina E, Luo Z, Wagner C, Schweizer GF, Marshall DF, Kearsey MJ, Williams RW, Waugh R.

BMC Genet. 2008 Nov 18;9:73. doi: 10.1186/1471-2156-9-73.


A cation/proton-exchanging protein is a candidate for the barley NecS1 gene controlling necrosis and enhanced defense response to stem rust.

Zhang L, Lavery L, Gill U, Gill K, Steffenson B, Yan G, Chen X, Kleinhofs A.

Theor Appl Genet. 2009 Jan;118(2):385-97. doi: 10.1007/s00122-008-0910-4.


Allele sequencing of the barley stem rust resistance gene Rpg1 identifies regions relevant to disease resistance.

Mirlohi A, Brueggeman R, Drader T, Nirmala J, Steffenson BJ, Kleinhofs A.

Phytopathology. 2008 Aug;98(8):910-8. doi: 10.1094/PHYTO-98-8-0910.


The stem rust resistance gene Rpg5 encodes a protein with nucleotide-binding-site, leucine-rich, and protein kinase domains.

Brueggeman R, Druka A, Nirmala J, Cavileer T, Drader T, Rostoks N, Mirlohi A, Bennypaul H, Gill U, Kudrna D, Whitelaw C, Kilian A, Han F, Sun Y, Gill K, Steffenson B, Kleinhofs A.

Proc Natl Acad Sci U S A. 2008 Sep 30;105(39):14970-5. doi: 10.1073/pnas.0807270105.


Frequent genic rearrangements in two regions of grass genomes identified by comparative sequence analysis.

Ramakrishna W, Ma J, Sanmiguel P, Emberton J, Dubcovsky J, Shiloff BA, Jiang Z, Rostoks N, Busso CS, Ogden M, Linton E, Kleinhofs A, Devos KM, Messing J, Bennetzen JL.

Comp Funct Genomics. 2002;3(2):165-6. doi: 10.1002/cfg.164. No abstract available.


Exploiting regulatory variation to identify genes underlying quantitative resistance to the wheat stem rust pathogen Puccinia graminis f. sp. tritici in barley.

Druka A, Potokina E, Luo Z, Bonar N, Druka I, Zhang L, Marshall DF, Steffenson BJ, Close TJ, Wise RP, Kleinhofs A, Williams RW, Kearsey MJ, Waugh R.

Theor Appl Genet. 2008 Jul;117(2):261-72. doi: 10.1007/s00122-008-0771-x.


Parallel expression profiling of barley-stem rust interactions.

Zhang L, Castell-Miller C, Dahl S, Steffenson B, Kleinhofs A.

Funct Integr Genomics. 2008 Aug;8(3):187-98. doi: 10.1007/s10142-007-0069-0.


Proteolysis of the barley receptor-like protein kinase RPG1 by a proteasome pathway is correlated with Rpg1-mediated stem rust resistance.

Nirmala J, Dahl S, Steffenson BJ, Kannangara CG, von Wettstein D, Chen X, Kleinhofs A.

Proc Natl Acad Sci U S A. 2007 Jun 12;104(24):10276-81.


A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits.

Wenzl P, Li H, Carling J, Zhou M, Raman H, Paul E, Hearnden P, Maier C, Xia L, Caig V, Ovesná J, Cakir M, Poulsen D, Wang J, Raman R, Smith KP, Muehlbauer GJ, Chalmers KJ, Kleinhofs A, Huttner E, Kilian A.

BMC Genomics. 2006 Aug 12;7:206.

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