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Items: 19

1.

Adaptive changes in global gene expression profile of lung carcinoma A549 cells acutely exposed to distinct types of AhR ligands.

Procházková J, Strapáčová S, Svržková L, Andrysík Z, Hýžďalová M, Hrubá E, Pěnčíková K, Líbalová H, Topinka J, Kléma J, Espinosa JM, Vondráček J, Machala M.

Toxicol Lett. 2018 Aug;292:162-174. doi: 10.1016/j.toxlet.2018.04.024. Epub 2018 Apr 25.

PMID:
29704546
2.

Gene expression profiling in healthy newborns from diverse localities of the Czech Republic.

Honkova K, Rossnerova A, Pavlikova J, Svecova V, Klema J, Topinka J, Milcova A, Libalova H, Choi H, Veleminsky M, Sram RJ, Rossner P Jr.

Environ Mol Mutagen. 2018 Mar 30. doi: 10.1002/em.22184. [Epub ahead of print]

PMID:
29602183
3.

Semantic biclustering for finding local, interpretable and predictive expression patterns.

Kléma J, Malinka F, Železný F.

BMC Genomics. 2017 Oct 16;18(Suppl 7):752. doi: 10.1186/s12864-017-4132-5.

4.

Transcriptional response to organic compounds from diverse gasoline and biogasoline fuel emissions in human lung cells.

Libalova H, Rossner P Jr, Vrbova K, Brzicova T, Sikorova J, Vojtisek-Lom M, Beranek V, Klema J, Ciganek M, Neca J, Machala M, Topinka J.

Toxicol In Vitro. 2018 Apr;48:329-341. doi: 10.1016/j.tiv.2018.02.002. Epub 2018 Feb 9.

5.

Replication of SNP associations with keratoconus in a Czech cohort.

Liskova P, Dudakova L, Krepelova A, Klema J, Hysi PG.

PLoS One. 2017 Feb 16;12(2):e0172365. doi: 10.1371/journal.pone.0172365. eCollection 2017.

6.

Comparative Analysis of Toxic Responses of Organic Extracts from Diesel and Selected Alternative Fuels Engine Emissions in Human Lung BEAS-2B Cells.

Libalova H, Rossner P, Vrbova K, Brzicova T, Sikorova J, Vojtisek-Lom M, Beranek V, Klema J, Ciganek M, Neca J, Pencikova K, Machala M, Topinka J.

Int J Mol Sci. 2016 Nov 3;17(11). pii: E1833.

7.

Up-regulation of ribosomal genes is associated with a poor response to azacitidine in myelodysplasia and related neoplasms.

Monika Belickova M, Merkerova MD, Votavova H, Valka J, Vesela J, Pejsova B, Hajkova H, Klema J, Cermak J, Jonasova A.

Int J Hematol. 2016 Nov;104(5):566-573. Epub 2016 Jul 14.

PMID:
27416819
8.

Sequential pattern mining for discovering gene interactions and their contextual information from biomedical texts.

Cellier P, Charnois T, Plantevit M, Rigotti C, Crémilleux B, Gandrillon O, Kléma J, Manguin JL.

J Biomed Semantics. 2015 May 18;6:27. doi: 10.1186/s13326-015-0023-3. eCollection 2015.

9.

Aberrant expression of the microRNA cluster in 14q32 is associated with del(5q) myelodysplastic syndrome and lenalidomide treatment.

Krejčík Z, Beličková M, Hruštincová A, Kléma J, Zemanová Z, Michalová K, Čermák J, Jonášová A, Dostálová Merkerová M.

Cancer Genet. 2015 Apr;208(4):156-61. doi: 10.1016/j.cancergen.2015.03.003. Epub 2015 Mar 12.

PMID:
25883014
10.

Network-constrained forest for regularized classification of omics data.

Anděl M, Kléma J, Krejčík Z.

Methods. 2015 Jul 15;83:88-97. doi: 10.1016/j.ymeth.2015.04.006. Epub 2015 Apr 11.

PMID:
25872185
11.

Analysis of gene expression changes in A549 cells induced by organic compounds from respirable air particles.

Líbalová H, Krčková S, Uhlířová K, Kléma J, Ciganek M, Rössner P Jr, Šrám RJ, Vondráček J, Machala M, Topinka J.

Mutat Res. 2014 Dec;770:94-105. doi: 10.1016/j.mrfmmm.2014.10.002. Epub 2014 Nov 3.

PMID:
25771875
12.

Genome-wide miRNA profiling in myelodysplastic syndrome with del(5q) treated with lenalidomide.

Merkerova MD, Krejcik Z, Belickova M, Hrustincova A, Klema J, Stara E, Zemanova Z, Michalova K, Cermak J, Jonasova A.

Eur J Haematol. 2015 Jul;95(1):35-43. doi: 10.1111/ejh.12458. Epub 2014 Nov 11.

13.

Genotoxicity but not the AhR-mediated activity of PAHs is inhibited by other components of complex mixtures of ambient air pollutants.

Líbalová H, Krčková S, Uhlířová K, Milcová A, Schmuczerová J, Ciganek M, Kléma J, Machala M, Šrám RJ, Topinka J.

Toxicol Lett. 2014 Mar 21;225(3):350-7. doi: 10.1016/j.toxlet.2014.01.028. Epub 2014 Jan 26.

14.

Molecular networks involved in the immune control of BK polyomavirus.

Girmanova E, Brabcova I, Klema J, Hribova P, Wohlfartova M, Skibova J, Viklicky O.

Clin Dev Immunol. 2012;2012:972102. doi: 10.1155/2012/972102. Epub 2012 Dec 5.

15.

Comparative evaluation of set-level techniques in predictive classification of gene expression samples.

Holec M, Kléma J, Zelezný F, Tolar J.

BMC Bioinformatics. 2012 Jun 25;13 Suppl 10:S15. doi: 10.1186/1471-2105-13-S10-S15.

16.

Empirical evidence of the applicability of functional clustering through gene expression classification.

Krejník M, Kléma J.

IEEE/ACM Trans Comput Biol Bioinform. 2012 May-Jun;9(3):788-98. doi: 10.1109/TCBB.2012.23.

PMID:
22291159
17.

Global gene expression changes in human embryonic lung fibroblasts induced by organic extracts from respirable air particles.

Líbalová H, Uhlířová K, Kléma J, Machala M, Šrám RJ, Ciganek M, Topinka J.

Part Fibre Toxicol. 2012 Jan 12;9:1. doi: 10.1186/1743-8977-9-1.

18.

Schizophrenia prediction with the adaboost algorithm.

Hrdlicka J, Klema J.

Stud Health Technol Inform. 2011;169:574-8.

PMID:
21893814
19.

Optimized model tuning in medical systems.

Kléma J, Kubalík J, Lhotská L.

Comput Methods Programs Biomed. 2005 Dec;80 Suppl 1:S17-28.

PMID:
16520140

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