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Items: 1 to 20 of 117

1.

The blood DNA virome in 8,000 humans.

Moustafa A, Xie C, Kirkness E, Biggs W, Wong E, Turpaz Y, Bloom K, Delwart E, Nelson KE, Venter JC, Telenti A.

PLoS Pathog. 2017 Mar 22;13(3):e1006292. doi: 10.1371/journal.ppat.1006292. eCollection 2017 Mar.

2.

Whole-genome sequencing identifies common-to-rare variants associated with human blood metabolites.

Long T, Hicks M, Yu HC, Biggs WH, Kirkness EF, Menni C, Zierer J, Small KS, Mangino M, Messier H, Brewerton S, Turpaz Y, Perkins BA, Evans AM, Miller LA, Guo L, Caskey CT, Schork NJ, Garner C, Spector TD, Venter JC, Telenti A.

Nat Genet. 2017 Apr;49(4):568-578. doi: 10.1038/ng.3809. Epub 2017 Mar 6.

PMID:
28263315
3.

Comparative analysis of the Rotarix™ vaccine strain and G1P[8] rotaviruses detected before and after vaccine introduction in Belgium.

Zeller M, Heylen E, Tamim S, McAllen JK, Kirkness EF, Akopov A, De Coster S, Van Ranst M, Matthijnssens J.

PeerJ. 2017 Jan 3;5:e2733. doi: 10.7717/peerj.2733. eCollection 2017.

4.

Deep sequencing of 10,000 human genomes.

Telenti A, Pierce LC, Biggs WH, di Iulio J, Wong EH, Fabani MM, Kirkness EF, Moustafa A, Shah N, Xie C, Brewerton SC, Bulsara N, Garner C, Metzker G, Sandoval E, Perkins BA, Och FJ, Turpaz Y, Venter JC.

Proc Natl Acad Sci U S A. 2016 Oct 18;113(42):11901-11906. Epub 2016 Oct 4.

5.

Transcriptomic evidence for modulation of host inflammatory responses during febrile Plasmodium falciparum malaria.

Tran TM, Jones MB, Ongoiba A, Bijker EM, Schats R, Venepally P, Skinner J, Doumbo S, Quinten E, Visser LG, Whalen E, Presnell S, O'Connell EM, Kayentao K, Doumbo OK, Chaussabel D, Lorenzi H, Nutman TB, Ottenhoff TH, Haks MC, Traore B, Kirkness EF, Sauerwein RW, Crompton PD.

Sci Rep. 2016 Aug 10;6:31291. doi: 10.1038/srep31291.

6.

Stool microbiota composition is associated with the prospective risk of Plasmodium falciparum infection.

Yooseph S, Kirkness EF, Tran TM, Harkins DM, Jones MB, Torralba MG, O'Connell E, Nutman TB, Doumbo S, Doumbo OK, Traore B, Crompton PD, Nelson KE.

BMC Genomics. 2015 Aug 22;16:631. doi: 10.1186/s12864-015-1819-3.

7.

Genome-Wide Evolutionary Analyses of G1P[8] Strains Isolated Before and After Rotavirus Vaccine Introduction.

Zeller M, Donato C, Trovão NS, Cowley D, Heylen E, Donker NC, McAllen JK, Akopov A, Kirkness EF, Lemey P, Van Ranst M, Matthijnssens J, Kirkwood CD.

Genome Biol Evol. 2015 Aug 8;7(9):2473-83. doi: 10.1093/gbe/evv157.

8.

Characterization of a G1P[8] rotavirus causing an outbreak of gastroenteritis in the Northern Territory, Australia, in the vaccine era.

Donato CM, Cowley D, Snelling TL, Akopov A, Kirkness EF, Kirkwood CD.

Emerg Microbes Infect. 2014 Jul;3(7):e47. doi: 10.1038/emi.2014.47. Epub 2014 Jul 2.

9.

A model of a patient-derived IDH1 mutant anaplastic astrocytoma with alternative lengthening of telomeres.

Borodovsky A, Meeker AK, Kirkness EF, Zhao Q, Eberhart CG, Gallia GL, Riggins GJ.

J Neurooncol. 2015 Feb;121(3):479-87. doi: 10.1007/s11060-014-1672-2. Epub 2014 Dec 4.

10.

Comparative genomic analysis of genogroup 1 (Wa-like) rotaviruses circulating in the USA, 2006-2009.

Roy S, Esona MD, Kirkness EF, Akopov A, McAllen JK, Wikswo ME, Cortese MM, Payne DC, Parashar UD, Gentsch JR, Bowen MD; National Rotavirus Strain Surveillance System.; New Vaccine Surveillance Network..

Infect Genet Evol. 2014 Dec;28:513-23. doi: 10.1016/j.meegid.2014.09.021. Epub 2014 Oct 6.

11.

Whole-genome analyses reveals the animal origin of a rotavirus G4P[6] detected in a child with severe diarrhea.

Martinez M, Galeano ME, Akopov A, Palacios R, Russomando G, Kirkness EF, Parra GI.

Infect Genet Evol. 2014 Oct;27:156-62. doi: 10.1016/j.meegid.2014.07.020. Epub 2014 Jul 27.

PMID:
25075468
12.

Analysis of human rotaviruses from a single location over an 18-year time span suggests that protein coadaption influences gene constellations.

Zhang S, McDonald PW, Thompson TA, Dennis AF, Akopov A, Kirkness EF, Patton JT, McDonald SM.

J Virol. 2014 Sep 1;88(17):9842-63. doi: 10.1128/JVI.01562-14. Epub 2014 Jun 18.

13.

Absence of genetic differences among G10P[11] rotaviruses associated with asymptomatic and symptomatic neonatal infections in Vellore, India.

Libonati MH, Dennis AF, Ramani S, McDonald SM, Akopov A, Kirkness EF, Kang G, Patton JT.

J Virol. 2014 Aug;88(16):9060-71. doi: 10.1128/JVI.01417-14. Epub 2014 Jun 4.

14.

Wild-type measles viruses with non-standard genome lengths.

Bankamp B, Liu C, Rivailler P, Bera J, Shrivastava S, Kirkness EF, Bellini WJ, Rota PA.

PLoS One. 2014 Apr 18;9(4):e95470. doi: 10.1371/journal.pone.0095470. eCollection 2014.

15.

Analysis of whole genome sequences of 16 strains of rubella virus from the United States, 1961-2009.

Abernathy E, Chen MH, Bera J, Shrivastava S, Kirkness E, Zheng Q, Bellini W, Icenogle J.

Virol J. 2013 Jan 25;10:32. doi: 10.1186/1743-422X-10-32.

16.

Sequencing of isolated sperm cells for direct haplotyping of a human genome.

Kirkness EF, Grindberg RV, Yee-Greenbaum J, Marshall CR, Scherer SW, Lasken RS, Venter JC.

Genome Res. 2013 May;23(5):826-32. doi: 10.1101/gr.144600.112. Epub 2013 Jan 2.

17.

Diversity and relationships of cocirculating modern human rotaviruses revealed using large-scale comparative genomics.

McDonald SM, McKell AO, Rippinger CM, McAllen JK, Akopov A, Kirkness EF, Payne DC, Edwards KM, Chappell JD, Patton JT.

J Virol. 2012 Sep;86(17):9148-62. doi: 10.1128/JVI.01105-12. Epub 2012 Jun 13.

18.

Systems immunology of human malaria.

Tran TM, Samal B, Kirkness E, Crompton PD.

Trends Parasitol. 2012 Jun;28(6):248-57. doi: 10.1016/j.pt.2012.03.006. Epub 2012 May 15. Review.

19.

Origins of domestic dog in southern East Asia is supported by analysis of Y-chromosome DNA.

Ding ZL, Oskarsson M, Ardalan A, Angleby H, Dahlgren LG, Tepeli C, Kirkness E, Savolainen P, Zhang YP.

Heredity (Edinb). 2012 May;108(5):507-14. doi: 10.1038/hdy.2011.114. Epub 2011 Nov 23.

20.

Distinct patterns of somatic alterations in a lymphoblastoid and a tumor genome derived from the same individual.

Galante PA, Parmigiani RB, Zhao Q, Caballero OL, de Souza JE, Navarro FC, Gerber AL, Nicolás MF, Salim AC, Silva AP, Edsall L, Devalle S, Almeida LG, Ye Z, Kuan S, Pinheiro DG, Tojal I, Pedigoni RG, de Sousa RG, Oliveira TY, de Paula MG, Ohno-Machado L, Kirkness EF, Levy S, da Silva WA Jr, Vasconcelos AT, Ren B, Zago MA, Strausberg RL, Simpson AJ, de Souza SJ, Camargo AA.

Nucleic Acids Res. 2011 Aug;39(14):6056-68. doi: 10.1093/nar/gkr221. Epub 2011 Apr 14.

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