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Items: 1 to 20 of 115

1.

Novel lincRNA SLINKY is a prognostic biomarker in kidney cancer.

Gong X, Siprashvili Z, Eminaga O, Shen Z, Sato Y, Kume H, Homma Y, Ogawa S, Khavari PA, Pollack JR, Brooks JD.

Oncotarget. 2017 Mar 21;8(12):18657-18669. doi: 10.18632/oncotarget.15703.

2.

HiChIP: efficient and sensitive analysis of protein-directed genome architecture.

Mumbach MR, Rubin AJ, Flynn RA, Dai C, Khavari PA, Greenleaf WJ, Chang HY.

Nat Methods. 2016 Nov;13(11):919-922. doi: 10.1038/nmeth.3999. Epub 2016 Sep 19.

3.

Factors That May Promote an Effective Local Research Environment.

Wang K, Lee CS, Marinkovich MP, Chang HY, Oro AE, Khavari PA.

J Invest Dermatol. 2016 Aug;136(8):1529-31. doi: 10.1016/j.jid.2016.04.015. No abstract available.

PMID:
27450496
4.

RAC1 activation drives pathologic interactions between the epidermis and immune cells.

Winge MC, Ohyama B, Dey CN, Boxer LM, Li W, Ehsani-Chimeh N, Truong AK, Wu D, Armstrong AW, Makino T, Davidson M, Starcevic D, Kislat A, Nguyen NT, Hashimoto T, Homey B, Khavari PA, Bradley M, Waterman EA, Marinkovich MP.

J Clin Invest. 2016 Jul 1;126(7):2661-77. doi: 10.1172/JCI85738. Epub 2016 Jun 13.

5.

irCLIP platform for efficient characterization of protein-RNA interactions.

Zarnegar BJ, Flynn RA, Shen Y, Do BT, Chang HY, Khavari PA.

Nat Methods. 2016 Jun;13(6):489-92. doi: 10.1038/nmeth.3840. Epub 2016 Apr 25.

6.

7SK-BAF axis controls pervasive transcription at enhancers.

Flynn RA, Do BT, Rubin AJ, Calo E, Lee B, Kuchelmeister H, Rale M, Chu C, Kool ET, Wysocka J, Khavari PA, Chang HY.

Nat Struct Mol Biol. 2016 Mar;23(3):231-8. doi: 10.1038/nsmb.3176. Epub 2016 Feb 15.

7.

A novel ATAC-seq approach reveals lineage-specific reinforcement of the open chromatin landscape via cooperation between BAF and p63.

Bao X, Rubin AJ, Qu K, Zhang J, Giresi PG, Chang HY, Khavari PA.

Genome Biol. 2015 Dec 18;16:284. doi: 10.1186/s13059-015-0840-9.

8.

Network Analysis Identifies Mitochondrial Regulation of Epidermal Differentiation by MPZL3 and FDXR.

Bhaduri A, Ungewickell A, Boxer LD, Lopez-Pajares V, Zarnegar BJ, Khavari PA.

Dev Cell. 2015 Nov 23;35(4):444-57. doi: 10.1016/j.devcel.2015.10.023.

9.

The noncoding RNAs SNORD50A and SNORD50B bind K-Ras and are recurrently deleted in human cancer.

Siprashvili Z, Webster DE, Johnston D, Shenoy RM, Ungewickell AJ, Bhaduri A, Flockhart R, Zarnegar BJ, Che Y, Meschi F, Puglisi JD, Khavari PA.

Nat Genet. 2016 Jan;48(1):53-8. doi: 10.1038/ng.3452. Epub 2015 Nov 23.

10.

CALML5 is a ZNF750- and TINCR-induced protein that binds stratifin to regulate epidermal differentiation.

Sun BK, Boxer LD, Ransohoff JD, Siprashvili Z, Qu K, Lopez-Pajares V, Hollmig ST, Khavari PA.

Genes Dev. 2015 Nov 1;29(21):2225-30. doi: 10.1101/gad.267708.115.

11.

Genomic analysis of mycosis fungoides and S├ęzary syndrome identifies recurrent alterations in TNFR2.

Ungewickell A, Bhaduri A, Rios E, Reuter J, Lee CS, Mah A, Zehnder A, Ohgami R, Kulkarni S, Armstrong R, Weng WK, Gratzinger D, Tavallaee M, Rook A, Snyder M, Kim Y, Khavari PA.

Nat Genet. 2015 Sep;47(9):1056-60. doi: 10.1038/ng.3370. Epub 2015 Aug 10.

PMID:
26258847
12.

A LncRNA-MAF:MAFB transcription factor network regulates epidermal differentiation.

Lopez-Pajares V, Qu K, Zhang J, Webster DE, Barajas BC, Siprashvili Z, Zarnegar BJ, Boxer LD, Rios EJ, Tao S, Kretz M, Khavari PA.

Dev Cell. 2015 Mar 23;32(6):693-706. doi: 10.1016/j.devcel.2015.01.028.

13.

Advances in skin grafting and treatment of cutaneous wounds.

Sun BK, Siprashvili Z, Khavari PA.

Science. 2014 Nov 21;346(6212):941-5. doi: 10.1126/science.1253836. Review.

PMID:
25414301
14.

Dissecting noncoding and pathogen RNA-protein interactomes.

Flynn RA, Martin L, Spitale RC, Do BT, Sagan SM, Zarnegar B, Qu K, Khavari PA, Quake SR, Sarnow P, Chang HY.

RNA. 2015 Jan;21(1):135-43. doi: 10.1261/rna.047803.114. Epub 2014 Nov 19.

15.

ZNF750 interacts with KLF4 and RCOR1, KDM1A, and CTBP1/2 chromatin regulators to repress epidermal progenitor genes and induce differentiation genes.

Boxer LD, Barajas B, Tao S, Zhang J, Khavari PA.

Genes Dev. 2014 Sep 15;28(18):2013-26. doi: 10.1101/gad.246579.114.

16.

Recurrent point mutations in the kinetochore gene KNSTRN in cutaneous squamous cell carcinoma.

Lee CS, Bhaduri A, Mah A, Johnson WL, Ungewickell A, Aros CJ, Nguyen CB, Rios EJ, Siprashvili Z, Straight A, Kim J, Aasi SZ, Khavari PA.

Nat Genet. 2014 Oct;46(10):1060-2. doi: 10.1038/ng.3091. Epub 2014 Sep 7.

17.

Quantitative analysis of mammalian translation initiation sites by FACS-seq.

Noderer WL, Flockhart RJ, Bhaduri A, Diaz de Arce AJ, Zhang J, Khavari PA, Wang CL.

Mol Syst Biol. 2014 Aug 28;10:748. doi: 10.15252/msb.20145136.

18.

Dicer-microRNA-Myc circuit promotes transcription of hundreds of long noncoding RNAs.

Zheng GX, Do BT, Webster DE, Khavari PA, Chang HY.

Nat Struct Mol Biol. 2014 Jul;21(7):585-90. doi: 10.1038/nsmb.2842. Epub 2014 Jun 15.

19.

Enhancer-targeted genome editing selectively blocks innate resistance to oncokinase inhibition.

Webster DE, Barajas B, Bussat RT, Yan KJ, Neela PH, Flockhart RJ, Kovalski J, Zehnder A, Khavari PA.

Genome Res. 2014 May;24(5):751-60. doi: 10.1101/gr.166231.113. Epub 2014 Jan 17.

20.

Activating HRAS mutation in nevus spilus.

Sarin KY, McNiff JM, Kwok S, Kim J, Khavari PA.

J Invest Dermatol. 2014 Jun;134(6):1766-8. doi: 10.1038/jid.2014.6. Epub 2014 Jan 3. No abstract available.

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