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Items: 1 to 20 of 49

1.

Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome.

Cockram J, White J, Zuluaga DL, Smith D, Comadran J, Macaulay M, Luo Z, Kearsey MJ, Werner P, Harrap D, Tapsell C, Liu H, Hedley PE, Stein N, Schulte D, Steuernagel B, Marshall DF, Thomas WT, Ramsay L, Mackay I, Balding DJ; AGOUEB Consortium, Waugh R, O'Sullivan DM.

Proc Natl Acad Sci U S A. 2010 Dec 14;107(50):21611-6. doi: 10.1073/pnas.1010179107. Epub 2010 Nov 29.

2.

Why do essential proteins tend to be clustered in the yeast interactome network?

Lu C, Hu X, Wang G, Leach LJ, Yang S, Kearsey MJ, Luo ZW.

Mol Biosyst. 2010 May;6(5):871-7. doi: 10.1039/b921069e. Epub 2010 Feb 18.

PMID:
20567773
3.

Multilocus tetrasomic linkage analysis using hidden Markov chain model.

Leach LJ, Wang L, Kearsey MJ, Luo Z.

Proc Natl Acad Sci U S A. 2010 Mar 2;107(9):4270-4. doi: 10.1073/pnas.0908477107. Epub 2010 Feb 8.

4.

[The transcriptome analysis of barley (Hordeum vulgare L.) using the Affymetrix Barley1 GeneChip].

Potokina EK, Druka A, Luo Z, Waugh R, Kearsey MJ.

Genetika. 2009 Nov;45(11):1493-505. Russian.

PMID:
20058796
5.

Transcript profiling and expression level mapping.

Potokina E, Druka A, Kearsey MJ.

Methods Mol Biol. 2009;513:81-92. doi: 10.1007/978-1-59745-427-8_5.

PMID:
19347647
6.

Robust detection and genotyping of single feature polymorphisms from gene expression data.

Wang M, Hu X, Li G, Leach LJ, Potokina E, Druka A, Waugh R, Kearsey MJ, Luo Z.

PLoS Comput Biol. 2009 Mar;5(3):e1000317. doi: 10.1371/journal.pcbi.1000317. Epub 2009 Mar 13.

7.

Towards systems genetic analyses in barley: Integration of phenotypic, expression and genotype data into GeneNetwork.

Druka A, Druka I, Centeno AG, Li H, Sun Z, Thomas WT, Bonar N, Steffenson BJ, Ullrich SE, Kleinhofs A, Wise RP, Close TJ, Potokina E, Luo Z, Wagner C, Schweizer GF, Marshall DF, Kearsey MJ, Williams RW, Waugh R.

BMC Genet. 2008 Nov 18;9:73. doi: 10.1186/1471-2156-9-73.

8.

A and C genome distinction and chromosome identification in brassica napus by sequential fluorescence in situ hybridization and genomic in situ hybridization.

Howell EC, Kearsey MJ, Jones GH, King GJ, Armstrong SJ.

Genetics. 2008 Dec;180(4):1849-57. doi: 10.1534/genetics.108.095893. Epub 2008 Oct 9.

9.

Methods for evaluating gene expression from Affymetrix microarray datasets.

Jiang N, Leach LJ, Hu X, Potokina E, Jia T, Druka A, Waugh R, Kearsey MJ, Luo ZW.

BMC Bioinformatics. 2008 Jun 17;9:284. doi: 10.1186/1471-2105-9-284.

10.

Exploiting regulatory variation to identify genes underlying quantitative resistance to the wheat stem rust pathogen Puccinia graminis f. sp. tritici in barley.

Druka A, Potokina E, Luo Z, Bonar N, Druka I, Zhang L, Marshall DF, Steffenson BJ, Close TJ, Wise RP, Kleinhofs A, Williams RW, Kearsey MJ, Waugh R.

Theor Appl Genet. 2008 Jul;117(2):261-72. doi: 10.1007/s00122-008-0771-x. Epub 2008 Apr 30.

PMID:
18542913
11.

Does sequence polymorphism of FLC paralogues underlie flowering time QTL in Brassica oleracea?

Razi H, Howell EC, Newbury HJ, Kearsey MJ.

Theor Appl Genet. 2008 Jan;116(2):179-92. Epub 2007 Oct 16.

PMID:
17938878
12.

The role of cis-regulatory motifs and genetical control of expression in the divergence of yeast duplicate genes.

Leach LJ, Zhang Z, Lu C, Kearsey MJ, Luo Z.

Mol Biol Evol. 2007 Nov;24(11):2556-65. Epub 2007 Sep 10.

PMID:
17846103
13.

Impacts of yeast metabolic network structure on enzyme evolution.

Lu C, Zhang Z, Leach L, Kearsey MJ, Luo ZW.

Genome Biol. 2007;8(8):407. No abstract available.

14.

SFP genotyping from affymetrix arrays is robust but largely detects cis-acting expression regulators.

Luo ZW, Potokina E, Druka A, Wise R, Waugh R, Kearsey MJ.

Genetics. 2007 Jun;176(2):789-800. Epub 2007 Apr 3.

15.

Identification and characterization of QTL controlling Agrobacterium-mediated transient and stable transformation of Brassica oleracea.

Cogan NO, Newbury HJ, Oldacres AM, Lynn JR, Kearsey MJ, King GJ, Puddephat IJ.

Plant Biotechnol J. 2004 Jan;2(1):59-69.

16.

Constructing genetic linkage maps under a tetrasomic model.

Luo ZW, Zhang Z, Leach L, Zhang RM, Bradshaw JE, Kearsey MJ.

Genetics. 2006 Apr;172(4):2635-45. Epub 2006 Jan 16.

17.
18.

Divergence pattern of duplicate genes in protein-protein interactions follows the power law.

Zhang Z, Luo ZW, Kishino H, Kearsey MJ.

Mol Biol Evol. 2005 Mar;22(3):501-5. Epub 2004 Nov 3. Erratum in: Mol Biol Evol. 2005 Apr;22(4):1158. Mol Biol Evol. 2005 Apr;22(4):1156.

PMID:
15525702
19.

Theoretical basis for genetic linkage analysis in autotetraploid species.

Luo ZW, Zhang RM, Kearsey MJ.

Proc Natl Acad Sci U S A. 2004 May 4;101(18):7040-5. Epub 2004 Apr 20.

20.

Relevance of connexin deafness (DFNB1) to human evolution.

Nance WE, Kearsey MJ.

Am J Hum Genet. 2004 Jun;74(6):1081-7. Epub 2004 Apr 9. Review.

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