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Items: 19

1.

Evaluation of microRNA alignment techniques.

Ziemann M, Kaspi A, El-Osta A.

RNA. 2016 Aug;22(8):1120-38. doi: 10.1261/rna.055509.115. Epub 2016 Jun 9.

PMID:
27284164
2.

Etiology matters - Genomic DNA Methylation Patterns in Three Rat Models of Acquired Epilepsy.

Dębski KJ, Pitkanen A, Puhakka N, Bot AM, Khurana I, Harikrishnan KN, Ziemann M, Kaspi A, El-Osta A, Lukasiuk K, Kobow K.

Sci Rep. 2016 May 9;6:25668. doi: 10.1038/srep25668.

3.

DNA methylation regulates hypothalamic gene expression linking parental diet during pregnancy to the offspring's risk of obesity in Psammomys obesus.

Khurana I, Kaspi A, Ziemann M, Block T, Connor T, Spolding B, Cooper A, Zimmet P, El-Osta A, Walder K.

Int J Obes (Lond). 2016 Jul;40(7):1079-88. doi: 10.1038/ijo.2016.64. Epub 2016 Apr 25.

PMID:
27108813
4.

Dynamic changes in the cardiac methylome during postnatal development.

Sim CB, Ziemann M, Kaspi A, Harikrishnan KN, Ooi J, Khurana I, Chang L, Hudson JE, El-Osta A, Porrello ER.

FASEB J. 2015 Apr;29(4):1329-43. doi: 10.1096/fj.14-264093. Epub 2014 Dec 9.

5.

Non-referenced genome assembly from epigenomic short-read data.

Kaspi A, Ziemann M, Keating ST, Khurana I, Connor T, Spolding B, Cooper A, Lazarus R, Walder K, Zimmet P, El-Osta A.

Epigenetics. 2014 Oct;9(10):1329-38. doi: 10.4161/15592294.2014.969610.

6.

Vascular histone deacetylation by pharmacological HDAC inhibition.

Rafehi H, Balcerczyk A, Lunke S, Kaspi A, Ziemann M, Kn H, Okabe J, Khurana I, Ooi J, Khan AW, Du XJ, Chang L, Haviv I, Keating ST, Karagiannis TC, El-Osta A.

Genome Res. 2014 Aug;24(8):1271-84. doi: 10.1101/gr.168781.113. Epub 2014 Apr 14.

7.

Rapid development of non-alcoholic steatohepatitis in Psammomys obesus (Israeli sand rat).

Spolding B, Connor T, Wittmer C, Abreu LL, Kaspi A, Ziemann M, Kaur G, Cooper A, Morrison S, Lee S, Sinclair A, Gibert Y, Trevaskis JL, Roth JD, El-Osta A, Standish R, Walder K.

PLoS One. 2014 Mar 20;9(3):e92656. doi: 10.1371/journal.pone.0092656. eCollection 2014 Mar 20.

8.

Deep sequencing reveals increased DNA methylation in chronic rat epilepsy.

Kobow K, Kaspi A, Harikrishnan KN, Kiese K, Ziemann M, Khurana I, Fritzsche I, Hauke J, Hahnen E, Coras R, Mühlebner A, El-Osta A, Blümcke I.

Acta Neuropathol. 2013 Nov;126(5):741-56. doi: 10.1007/s00401-013-1168-8. Epub 2013 Sep 5.

9.

Molecular profiling of human mammary gland links breast cancer risk to a p27(+) cell population with progenitor characteristics.

Choudhury S, Almendro V, Merino VF, Wu Z, Maruyama R, Su Y, Martins FC, Fackler MJ, Bessarabova M, Kowalczyk A, Conway T, Beresford-Smith B, Macintyre G, Cheng YK, Lopez-Bujanda Z, Kaspi A, Hu R, Robens J, Nikolskaya T, Haakensen VD, Schnitt SJ, Argani P, Ethington G, Panos L, Grant M, Clark J, Herlihy W, Lin SJ, Chew G, Thompson EW, Greene-Colozzi A, Richardson AL, Rosson GD, Pike M, Garber JE, Nikolsky Y, Blum JL, Au A, Hwang ES, Tamimi RM, Michor F, Haviv I, Liu XS, Sukumar S, Polyak K.

Cell Stem Cell. 2013 Jul 3;13(1):117-30. doi: 10.1016/j.stem.2013.05.004. Epub 2013 Jun 13.

10.

Motif analysis in DNAse hypersensitivity regions uncovers distal cis elements associated with gene expression.

Ziemann M, Kaspi A, Lazarus R, El-Osta A.

Bioinformation. 2013;9(4):212-5. doi: 10.6026/97320630009212. Epub 2013 Feb 21.

11.

Creating reusable tools from scripts: the Galaxy Tool Factory.

Lazarus R, Kaspi A, Ziemann M; Galaxy Team..

Bioinformatics. 2012 Dec 1;28(23):3139-40. doi: 10.1093/bioinformatics/bts573. Epub 2012 Sep 28.

12.

A pipeline for the identification and characterization of chromatin modifications derived from ChIP-Seq datasets.

Kaspi A, Ziemann M, Rafehi H, Lazarus R, El-Osta A.

Biochimie. 2012 Nov;94(11):2353-9. doi: 10.1016/j.biochi.2012.06.002. Epub 2012 Jun 13.

PMID:
22705386
13.

Genome-wide analysis distinguishes hyperglycemia regulated epigenetic signatures of primary vascular cells.

Pirola L, Balcerczyk A, Tothill RW, Haviv I, Kaspi A, Lunke S, Ziemann M, Karagiannis T, Tonna S, Kowalczyk A, Beresford-Smith B, Macintyre G, Kelong M, Hongyu Z, Zhu J, El-Osta A.

Genome Res. 2011 Oct;21(10):1601-15. doi: 10.1101/gr.116095.110. Epub 2011 Sep 2.

14.

Epigenetic regulation of cell type-specific expression patterns in the human mammary epithelium.

Maruyama R, Choudhury S, Kowalczyk A, Bessarabova M, Beresford-Smith B, Conway T, Kaspi A, Wu Z, Nikolskaya T, Merino VF, Lo PK, Liu XS, Nikolsky Y, Sukumar S, Haviv I, Polyak K.

PLoS Genet. 2011 Apr;7(4):e1001369. doi: 10.1371/journal.pgen.1001369. Epub 2011 Apr 21.

15.

Combining target enrichment with barcode multiplexing for high throughput SNP discovery.

Cummings N, King R, Rickers A, Kaspi A, Lunke S, Haviv I, Jowett JB.

BMC Genomics. 2010 Nov 18;11:641. doi: 10.1186/1471-2164-11-641.

16.

Reagent-dependent formation of C-C and C-F bonds in Pt complexes: an unexpected twist in the electrophilic fluorination chemistry.

Kaspi AW, Goldberg I, Vigalok A.

J Am Chem Soc. 2010 Aug 11;132(31):10626-7. doi: 10.1021/ja101436w.

PMID:
20681679
17.

Xenon difluoride induced aryl iodide reductive elimination: a simple access to difluoropalladium(II) complexes.

Kaspi AW, Yahav-Levi A, Goldberg I, Vigalok A.

Inorg Chem. 2008 Jan 7;47(1):5-7. Epub 2007 Dec 4.

PMID:
18052157
18.

[The United States in 1990: the debate over immigration].

Kaspi A.

Polit Etrang. 1990 Aug;55(3):651-9. French.

PMID:
12343196
19.

Entrapment of the distal suprascapular nerve. An anatomical study.

Kaspi A, Yanai J, Pick CG, Mann G.

Int Orthop. 1988;12(4):273-5.

PMID:
3220619

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