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Items: 1 to 20 of 62


Linking Maternal and Somatic 5S rRNA types with Different Sequence-Specific Non-LTR Retrotransposons.

Locati MD, Pagano JF, Ensink WA, van Olst M, van Leeuwen S, Nehrdich U, Zhu K, Spaink HP, Girard G, Rauwerda H, Jonker MJ, Dekker RJ, Breit TM.

RNA. 2016 Dec 21. pii: rna.059642.116. doi: 10.1261/rna.059642.116. [Epub ahead of print]


rRNA Operon Copy Number Can Explain the Distinct Epidemiology of Hospital-Associated Methicillin-Resistant Staphylococcus aureus.

Fluit AC, Jansen MD, Bosch T, Jansen WT, Schouls L, Jonker MJ, Boel CH.

Antimicrob Agents Chemother. 2016 Nov 21;60(12):7313-7320.


Dynamics of Mutations during Development of Resistance by Pseudomonas aeruginosa against Five Antibiotics.

Feng Y, Jonker MJ, Moustakas I, Brul S, Ter Kuile BH.

Antimicrob Agents Chemother. 2016 Jun 20;60(7):4229-36. doi: 10.1128/AAC.00434-16.


A Randomised Controlled Trial of Consent Procedures for the Use of Residual Tissues for Medical Research: Preferences of and Implications for Patients, Research and Clinical Practice.

Rebers S, Vermeulen E, Brandenburg AP, Stoof TJ, Zupan-Kajcovski B, Bos WJ, Jonker MJ, Bax CJ, van Driel WJ, Verwaal VJ, van den Brekel MW, Grutters JC, Tupker RA, Plusjé L, de Bree R, Schagen van Leeuwen JH, Vermeulen EG, de Leeuw RA, Brohet RM, Aaronson NK, Van Leeuwen FE, Schmidt MK.

PLoS One. 2016 Mar 30;11(3):e0152509. doi: 10.1371/journal.pone.0152509.


Confounding Factors in the Transcriptome Analysis of an In-Vivo Exposure Experiment.

Bruning O, Rodenburg W, Wackers PF, van Oostrom C, Jonker MJ, Dekker RJ, Rauwerda H, Ensink WA, de Vries A, Breit TM.

PLoS One. 2016 Jan 20;11(1):e0145252. doi: 10.1371/journal.pone.0145252.


Factors affecting the gene expression of in vitro cultured human preimplantation embryos.

Mantikou E, Jonker MJ, Wong KM, van Montfoort AP, de Jong M, Breit TM, Repping S, Mastenbroek S.

Hum Reprod. 2016 Feb;31(2):298-311. doi: 10.1093/humrep/dev306.


Differences in gene expression profiles between human preimplantation embryos cultured in two different IVF culture media.

Kleijkers SH, Eijssen LM, Coonen E, Derhaag JG, Mantikou E, Jonker MJ, Mastenbroek S, Repping S, Evers JL, Dumoulin JC, van Montfoort AP.

Hum Reprod. 2015 Oct;30(10):2303-11. doi: 10.1093/humrep/dev179.


A Novel Feedback Loop That Controls Bimodal Expression of Genetic Competence.

Gamba P, Jonker MJ, Hamoen LW.

PLoS Genet. 2015 Jun 25;11(6):e1005047. doi: 10.1371/journal.pgen.1005047.


Valuable lessons-learned in transcriptomics experimentation.

Bruning O, Rauwerda H, Dekker RJ, de Leeuw WC, Wackers PF, Ensink WA, Jonker MJ, Breit TM.

Transcription. 2015;6(3):51-5. doi: 10.1080/21541264.2015.1064195. Review.


Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization.

Locati MD, Terpstra I, de Leeuw WC, Kuzak M, Rauwerda H, Ensink WA, van Leeuwen S, Nehrdich U, Spaink HP, Jonker MJ, Breit TM, Dekker RJ.

Nucleic Acids Res. 2015 Aug 18;43(14):e89. doi: 10.1093/nar/gkv303.


Expectations and Outcomes of Reserve Network Performance following Re-zoning of the Great Barrier Reef Marine Park.

Emslie MJ, Logan M, Williamson DH, Ayling AM, MacNeil MA, Ceccarelli D, Cheal AJ, Evans RD, Johns KA, Jonker MJ, Miller IR, Osborne K, Russ GR, Sweatman HP.

Curr Biol. 2015 Apr 20;25(8):983-92. doi: 10.1016/j.cub.2015.01.073.


Staphylococcus aureus ST398 gene expression profiling during ex vivo colonization of porcine nasal epithelium.

Tulinski P, Duim B, Wittink FR, Jonker MJ, Breit TM, van Putten JP, Wagenaar JA, Fluit AC.

BMC Genomics. 2014 Oct 20;15:915. doi: 10.1186/1471-2164-15-915.


A novel toxicogenomics-based approach to categorize (non-)genotoxic carcinogens.

Schaap MM, Wackers PF, Zwart EP, Huijskens I, Jonker MJ, Hendriks G, Breit TM, van Steeg H, van de Water B, Luijten M.

Arch Toxicol. 2015 Dec;89(12):2413-27. doi: 10.1007/s00204-014-1368-6.


A range finding protocol to support design for transcriptomics experimentation: examples of in-vitro and in-vivo murine UV exposure.

Bruning O, Rodenburg W, van Oostrom CT, Jonker MJ, de Jong M, Dekker RJ, Rauwerda H, Ensink WA, de Vries A, Breit TM.

PLoS One. 2014 May 13;9(5):e97089. doi: 10.1371/journal.pone.0097089.


A day and night difference in the response of the hepatic transcriptome to cyclophosphamide treatment.

Van Dycke KC, Nijman RM, Wackers PF, Jonker MJ, Rodenburg W, van Oostrom CT, Salvatori DC, Breit TM, van Steeg H, Luijten M, van der Horst GT.

Arch Toxicol. 2015 Feb;89(2):221-31. doi: 10.1007/s00204-014-1257-z.


Absence/presence calling in microarray-based CGH experiments with non-model organisms.

Jonker MJ, de Leeuw WC, Marinković M, Wittink FR, Rauwerda H, Bruning O, Ensink WA, Fluit AC, Boel CH, Jong Md, Breit TM.

Nucleic Acids Res. 2014 Jun;42(11):e94. doi: 10.1093/nar/gku343.


In vivo murine hepatic microRNA and mRNA expression signatures predicting the (non-)genotoxic carcinogenic potential of chemicals.

Melis JP, Derks KW, Pronk TE, Wackers P, Schaap MM, Zwart E, van Ijcken WF, Jonker MJ, Breit TM, Pothof J, van Steeg H, Luijten M.

Arch Toxicol. 2014 Apr;88(4):1023-34. doi: 10.1007/s00204-013-1189-z.


Aging on a different scale--chronological versus pathology-related aging.

Melis JP, Jonker MJ, Vijg J, Hoeijmakers JH, Breit TM, van Steeg H.

Aging (Albany NY). 2013 Oct;5(10):782-8.


The conserved DNA-binding protein WhiA is involved in cell division in Bacillus subtilis.

Surdova K, Gamba P, Claessen D, Siersma T, Jonker MJ, Errington J, Hamoen LW.

J Bacteriol. 2013 Dec;195(24):5450-60. doi: 10.1128/JB.00507-13.


Life spanning murine gene expression profiles in relation to chronological and pathological aging in multiple organs.

Jonker MJ, Melis JP, Kuiper RV, van der Hoeven TV, Wackers PF, Robinson J, van der Horst GT, Dollé ME, Vijg J, Breit TM, Hoeijmakers JH, van Steeg H.

Aging Cell. 2013 Oct;12(5):901-9. doi: 10.1111/acel.12118.

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