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Items: 1 to 20 of 48

1.

Deep learning of the regulatory grammar of yeast 5' untranslated regions from 500,000 random sequences.

Cuperus JT, Groves B, Kuchina A, Rosenberg AB, Jojic N, Fields S, Seelig G.

Genome Res. 2017 Dec;27(12):2015-2024. doi: 10.1101/gr.224964.117. Epub 2017 Nov 2.

PMID:
29097404
2.

Traveling on discrete embeddings of gene expression.

Lovato P, Bicego M, Kesa M, Jojic N, Murino V, Perina A.

Artif Intell Med. 2016 Jun;70:1-11. doi: 10.1016/j.artmed.2016.05.002. Epub 2016 May 27.

PMID:
27431033
3.

European experience with methotrexate treatment in Crohn's disease: a multicenter retrospective analysis.

Kopylov U, Katsanos KH, van der Woude CJ, Karmiris K, Hernandez V, Odes S, Papamichael K, Koutroubakis IE, Bojic D, Kaimakliotis I, Fiorino G, Papageorgiou N, Pineda JR, Strongili K, Sanroman L, Mantzaris GJ, Jojic N, Paspatis G, Christodoulou DK, Ben-Horin S, Tsianos EV.

Eur J Gastroenterol Hepatol. 2016 Jul;28(7):802-6. doi: 10.1097/MEG.0000000000000609.

PMID:
26894634
4.

Optic Neuritis Associated or Not with TNF Antagonists in Patients with Inflammatory Bowel Disease.

Alexandre B, Vandermeeren Y, Dewit O, Moreels T, de Boer N, Dhar A, Ziady C, Shitrit AB, Steinwurz F, Jojic N, Costantino G, Bihin B, Rahier JF, Katsanos KH; ECCO CONFER investigators.

J Crohns Colitis. 2016 May;10(5):541-8. doi: 10.1093/ecco-jcc/jjw003. Epub 2016 Jan 12.

5.

Supranormal thymic output up to 2 decades after HIV-1 infection.

Aguilera-Sandoval CR, Yang OO, Jojic N, Lovato P, Chen DY, Boechat MI, Cooper P, Zuo J, Ramirez C, Belzer M, Church JA, Krogstad P.

AIDS. 2016 Mar 13;30(5):701-11. doi: 10.1097/QAD.0000000000001010.

6.

HLA-A is a Predictor of Hepatitis B e Antigen Status in HIV-Positive African Adults.

Matthews PC, Carlson JM, Beloukas A, Malik A, Jooste P, Ogwu A, Shapiro R, Riddell L, Chen F, Luzzi G, Jesuthasan G, Jeffery K, Jojic N, Ndung'u T, Carrington M, Goulder PJ, Geretti AM, Klenerman P.

J Infect Dis. 2016 Apr 15;213(8):1248-52. doi: 10.1093/infdis/jiv592. Epub 2015 Dec 9.

7.

Capturing Spatial Interdependence in Image Features: The Counting Grid, an Epitomic Representation for Bags of Features.

Perina A, Jojic N.

IEEE Trans Pattern Anal Mach Intell. 2015 Dec;37(12):2374-87. doi: 10.1109/TPAMI.2015.2424864.

PMID:
26539844
8.

RNA splicing. The human splicing code reveals new insights into the genetic determinants of disease.

Xiong HY, Alipanahi B, Lee LJ, Bretschneider H, Merico D, Yuen RK, Hua Y, Gueroussov S, Najafabadi HS, Hughes TR, Morris Q, Barash Y, Krainer AR, Jojic N, Scherer SW, Blencowe BJ, Frey BJ.

Science. 2015 Jan 9;347(6218):1254806. doi: 10.1126/science.1254806. Epub 2014 Dec 18.

9.

Mapping brains on grids of features for schizophrenia analysis.

Perina A, Peruzzo D, Maria Kesa, Jojic N, Murino V, Bellani M, Brambilla P, Castellani U.

Med Image Comput Comput Assist Interv. 2014;17(Pt 2):805-12.

PMID:
25485454
10.

The effectiveness and safety of rescue treatments in 108 patients with steroid-refractory ulcerative colitis with sequential rescue therapies in a subgroup of patients.

Protic M, Seibold F, Schoepfer A, Radojicic Z, Juillerat P, Bojic D, Mwinyi J, Mottet C, Jojic N, Beglinger C, Vavricka S, Rogler G, Frei P.

J Crohns Colitis. 2014 Nov;8(11):1427-37. doi: 10.1016/j.crohns.2014.05.004. Epub 2014 Jun 5.

PMID:
24908178
11.

Differential T-cell responses of semi-immune and susceptible malaria subjects to in silico predicted and synthetic peptides of Plasmodium falciparum.

Dinga JN, Kimbung Mbandi S, Cho-Ngwa F, Fon NP, Moliki J, Efeti RM, Nyasa BR, Anong DN, Jojic N, Heckerman D, Wang R, Titanji VP.

Acta Trop. 2014 Jul;135:104-21. doi: 10.1016/j.actatropica.2014.03.007. Epub 2014 Mar 26.

PMID:
24681218
12.

Bags of words models of epitope sets: HIV viral load regression with counting grids.

Perina A, Lovato P, Jojic N.

Pac Symp Biocomput. 2014:288-99.

13.

HLA targeting efficiency correlates with human T-cell response magnitude and with mortality from influenza A infection.

Hertz T, Oshansky CM, Roddam PL, DeVincenzo JP, Caniza MA, Jojic N, Mallal S, Phillips E, James I, Halloran ME, Thomas PG, Corey L.

Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):13492-7. doi: 10.1073/pnas.1221555110. Epub 2013 Jul 22.

14.

Hypolipidemic and antioxidant effects of buckwheat leaf and flower mixture in hyperlipidemic rats.

Ðurendić-Brenesel M, Popović T, Pilija V, Arsić A, Milić M, Kojić D, Jojić N, Milić N.

Bosn J Basic Med Sci. 2013 May;13(2):100-8.

15.

Clinical and pathological tools for identifying microsatellite instability in colorectal cancer.

Krivokapić Z, Marković S, Antić J, Dimitrijević I, Bojić D, Svorcan P, Jojić N, Damjanović S.

Croat Med J. 2012 Aug;53(4):328-35.

16.

Autoimmune polyglandular syndrome type 2, alopecia universalis and Crohn's disease.

Protic M, Gligorijevic V, Bojic D, Popovic B, Damjanovic S, Jojic N.

J Crohns Colitis. 2013 May;7(4):318-21. doi: 10.1016/j.crohns.2012.05.009. Epub 2012 Jun 5.

PMID:
22677116
17.

Challenges in estimating percent inclusion of alternatively spliced junctions from RNA-seq data.

Kakaradov B, Xiong HY, Lee LJ, Jojic N, Frey BJ.

BMC Bioinformatics. 2012 Apr 19;13 Suppl 6:S11. doi: 10.1186/1471-2105-13-S6-S11.

18.

Free Energy Score Spaces: Using Generative Information in Discriminative Classifiers.

Perina A, Cristani M, Castellani U, Murino V, Jojic N.

IEEE Trans Pattern Anal Mach Intell. 2012 Jul;34(7):1249-62. doi: 10.1109/TPAMI.2011.241. Epub 2012 Jan 3.

PMID:
22156097
19.

Nonparametric combinatorial sequence models.

Wauthier FL, Jordan MI, Jojic N.

J Comput Biol. 2011 Nov;18(11):1649-60. doi: 10.1089/cmb.2011.0175. Epub 2011 Nov 2.

PMID:
22047543
20.

Machine learning competition in immunology - Prediction of HLA class I binding peptides.

Zhang GL, Ansari HR, Bradley P, Cawley GC, Hertz T, Hu X, Jojic N, Kim Y, Kohlbacher O, Lund O, Lundegaard C, Magaret CA, Nielsen M, Papadopoulos H, Raghava GP, Tal VS, Xue LC, Yanover C, Zhu S, Rock MT, Crowe JE, Panayiotou C, Polycarpou MM, Duch W, Brusic V.

J Immunol Methods. 2011 Nov 30;374(1-2):1-4. doi: 10.1016/j.jim.2011.09.010. Epub 2011 Sep 29. No abstract available.

PMID:
21986107

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