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Items: 18

1.

Transcriptional networks of murine diabetic peripheral neuropathy and nephropathy: common and distinct gene expression patterns.

Hur J, O'Brien PD, Nair V, Hinder LM, McGregor BA, Jagadish HV, Kretzler M, Brosius FC 3rd, Feldman EL.

Diabetologia. 2016 Jun;59(6):1297-306. doi: 10.1007/s00125-016-3913-8. Epub 2016 Mar 21.

PMID:
27000313
2.

A graph algebra for scalable visual analytics.

Shaverdian AA, Zhou H, Michailidis G, Jagadish HV.

IEEE Comput Graph Appl. 2012 Jul-Aug;32(4):26-33. doi: 10.1109/MCG.2012.62.

PMID:
24806630
3.

THINK Back: KNowledge-based Interpretation of High Throughput data.

Farfán F, Ma J, Sartor MA, Michailidis G, Jagadish HV.

BMC Bioinformatics. 2012 Mar 13;13 Suppl 2:S4. doi: 10.1186/1471-2105-13-S2-S4.

4.

Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data.

Karnovsky A, Weymouth T, Hull T, Tarcea VG, Scardoni G, Laudanna C, Sartor MA, Stringer KA, Jagadish HV, Burant C, Athey B, Omenn GS.

Bioinformatics. 2012 Feb 1;28(3):373-80. doi: 10.1093/bioinformatics/btr661. Epub 2011 Nov 30.

5.

The NIH National Center for Integrative Biomedical Informatics (NCIBI).

Athey BD, Cavalcoli JD, Jagadish HV, Omenn GS, Mirel B, Kretzler M, Burant C, Isokpehi RD, DeLisi C; NCIBI faculty, trainees, and staff..

J Am Med Inform Assoc. 2012 Mar-Apr;19(2):166-70. doi: 10.1136/amiajnl-2011-000552. Epub 2011 Nov 19.

6.

The identification of gene expression profiles associated with progression of human diabetic neuropathy.

Hur J, Sullivan KA, Pande M, Hong Y, Sima AA, Jagadish HV, Kretzler M, Feldman EL.

Brain. 2011 Nov;134(Pt 11):3222-35. doi: 10.1093/brain/awr228. Epub 2011 Sep 16.

7.

Appearance frequency modulated gene set enrichment testing.

Ma J, Sartor MA, Jagadish HV.

BMC Bioinformatics. 2011 Mar 20;12:81. doi: 10.1186/1471-2105-12-81.

8.

Literature-based discovery of diabetes- and ROS-related targets.

Hur J, Sullivan KA, Schuyler AD, Hong Y, Pande M, States DJ, Jagadish HV, Feldman EL.

BMC Med Genomics. 2010 Oct 27;3:49. doi: 10.1186/1755-8794-3-49.

9.

Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks.

Gao J, Tarcea VG, Karnovsky A, Mirel BR, Weymouth TE, Beecher CW, Cavalcoli JD, Athey BD, Omenn GS, Burant CF, Jagadish HV.

Bioinformatics. 2010 Apr 1;26(7):971-3. doi: 10.1093/bioinformatics/btq048. Epub 2010 Feb 7.

10.

ConceptGen: a gene set enrichment and gene set relation mapping tool.

Sartor MA, Mahavisno V, Keshamouni VG, Cavalcoli J, Wright Z, Karnovsky A, Kuick R, Jagadish HV, Mirel B, Weymouth T, Athey B, Omenn GS.

Bioinformatics. 2010 Feb 15;26(4):456-63. doi: 10.1093/bioinformatics/btp683. Epub 2009 Dec 9.

11.

Network analysis of genes regulated in renal diseases: implications for a molecular-based classification.

Bhavnani SK, Eichinger F, Martini S, Saxman P, Jagadish HV, Kretzler M.

BMC Bioinformatics. 2009 Sep 17;10 Suppl 9:S3. doi: 10.1186/1471-2105-10-S9-S3.

12.

Michigan molecular interactions r2: from interacting proteins to pathways.

Tarcea VG, Weymouth T, Ade A, Bookvich A, Gao J, Mahavisno V, Wright Z, Chapman A, Jayapandian M, Ozgür A, Tian Y, Cavalcoli J, Mirel B, Patel J, Radev D, Athey B, States D, Jagadish HV.

Nucleic Acids Res. 2009 Jan;37(Database issue):D642-6. doi: 10.1093/nar/gkn722. Epub 2008 Oct 31.

13.

Integrating and annotating the interactome using the MiMI plugin for cytoscape.

Gao J, Ade AS, Tarcea VG, Weymouth TE, Mirel BR, Jagadish HV, States DJ.

Bioinformatics. 2009 Jan 1;25(1):137-8. doi: 10.1093/bioinformatics/btn501. Epub 2008 Sep 23.

14.

Simplifying access to a Clinical Data Repository using schema summarization.

Yu C, Hanauer DA, Athey BD, Jagadish HV, States DJ.

AMIA Annu Symp Proc. 2007 Oct 11:1163.

PMID:
18694259
15.

iTools: a framework for classification, categorization and integration of computational biology resources.

Dinov ID, Rubin D, Lorensen W, Dugan J, Ma J, Murphy S, Kirschner B, Bug W, Sherman M, Floratos A, Kennedy D, Jagadish HV, Schmidt J, Athey B, Califano A, Musen M, Altman R, Kikinis R, Kohane I, Delp S, Parker DS, Toga AW.

PLoS One. 2008 May 28;3(5):e2265. doi: 10.1371/journal.pone.0002265.

16.

Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together.

Jayapandian M, Chapman A, Tarcea VG, Yu C, Elkiss A, Ianni A, Liu B, Nandi A, Santos C, Andrews P, Athey B, States D, Jagadish HV.

Nucleic Acids Res. 2007 Jan;35(Database issue):D566-71. Epub 2006 Nov 27.

18.

Effective integration of protein data through better data modeling.

Chapman A, Yu C, Jagadish HV.

OMICS. 2003 Spring;7(1):101-2.

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