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Items: 1 to 20 of 75

1.

SILVA, RDP, Greengenes, NCBI and OTT - how do these taxonomies compare?

Balvočiūtė M, Huson DH.

BMC Genomics. 2017 Mar 14;18(Suppl 2):114. doi: 10.1186/s12864-017-3501-4.

2.

Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus.

Weyrich LS, Duchene S, Soubrier J, Arriola L, Llamas B, Breen J, Morris AG, Alt KW, Caramelli D, Dresely V, Farrell M, Farrer AG, Francken M, Gully N, Haak W, Hardy K, Harvati K, Held P, Holmes EC, Kaidonis J, Lalueza-Fox C, de la Rasilla M, Rosas A, Semal P, Soltysiak A, Townsend G, Usai D, Wahl J, Huson DH, Dobney K, Cooper A.

Nature. 2017 Apr 20;544(7650):357-361. doi: 10.1038/nature21674. Epub 2017 Mar 8.

PMID:
28273061
3.

RiboTagger: fast and unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome surveys.

Xie C, Goi CL, Huson DH, Little PF, Williams RB.

BMC Bioinformatics. 2016 Dec 22;17(Suppl 19):508. doi: 10.1186/s12859-016-1378-x.

4.

Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads.

Huson DH, Tappu R, Bazinet AL, Xie C, Cummings MP, Nieselt K, Williams R.

Microbiome. 2017 Jan 25;5(1):11. doi: 10.1186/s40168-017-0233-2.

5.

A simple statistical test of taxonomic or functional homogeneity using replicated microbiome sequencing samples.

Huson DH, Steel M, El-Hadidi M, Mitra S, Peter S, Willmann M.

J Biotechnol. 2016 Oct 27. pii: S0168-1656(16)31576-0. doi: 10.1016/j.jbiotec.2016.10.020. [Epub ahead of print]

6.

Analysis of Domain Architecture and Phylogenetics of Family 2 Glycoside Hydrolases (GH2).

Talens-Perales D, Górska A, Huson DH, Polaina J, Marín-Navarro J.

PLoS One. 2016 Dec 8;11(12):e0168035. doi: 10.1371/journal.pone.0168035. eCollection 2016.

7.

Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium.

Brugiroux S, Beutler M, Pfann C, Garzetti D, Ruscheweyh HJ, Ring D, Diehl M, Herp S, Lötscher Y, Hussain S, Bunk B, Pukall R, Huson DH, Münch PC, McHardy AC, McCoy KD, Macpherson AJ, Loy A, Clavel T, Berry D, Stecher B.

Nat Microbiol. 2016 Nov 21;2:16215. doi: 10.1038/nmicrobiol.2016.215.

PMID:
27869789
8.

A metagenomic-based survey of microbial (de)halogenation potential in a German forest soil.

Weigold P, El-Hadidi M, Ruecker A, Huson DH, Scholten T, Jochmann M, Kappler A, Behrens S.

Sci Rep. 2016 Jun 29;6:28958. doi: 10.1038/srep28958.

9.

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data.

Huson DH, Beier S, Flade I, Górska A, El-Hadidi M, Mitra S, Ruscheweyh HJ, Tappu R.

PLoS Comput Biol. 2016 Jun 21;12(6):e1004957. doi: 10.1371/journal.pcbi.1004957. eCollection 2016 Jun.

10.

Intestinal Dysbiosis, Barrier Dysfunction, and Bacterial Translocation Account for CKD-Related Systemic Inflammation.

Andersen K, Kesper MS, Marschner JA, Konrad L, Ryu M, Kumar Vr S, Kulkarni OP, Mulay SR, Romoli S, Demleitner J, Schiller P, Dietrich A, Müller S, Gross O, Ruscheweyh HJ, Huson DH, Stecher B, Anders HJ.

J Am Soc Nephrol. 2017 Jan;28(1):76-83. doi: 10.1681/ASN.2015111285. Epub 2016 May 5.

PMID:
27151924
11.

Soil biochar amendment shapes the composition of N2O-reducing microbial communities.

Harter J, Weigold P, El-Hadidi M, Huson DH, Kappler A, Behrens S.

Sci Total Environ. 2016 Aug 15;562:379-90. doi: 10.1016/j.scitotenv.2016.03.220. Epub 2016 Apr 18.

PMID:
27100017
12.

Extensive Mobilome-Driven Genome Diversification in Mouse Gut-Associated Bacteroides vulgatus mpk.

Lange A, Beier S, Steimle A, Autenrieth IB, Huson DH, Frick JS.

Genome Biol Evol. 2016 Apr 25;8(4):1197-207. doi: 10.1093/gbe/evw070.

13.

Characterization of the Gut Microbial Community of Obese Patients Following a Weight-Loss Intervention Using Whole Metagenome Shotgun Sequencing.

Louis S, Tappu RM, Damms-Machado A, Huson DH, Bischoff SC.

PLoS One. 2016 Feb 26;11(2):e0149564. doi: 10.1371/journal.pone.0149564. eCollection 2016.

14.

Antibiotic Selection Pressure Determination through Sequence-Based Metagenomics.

Willmann M, El-Hadidi M, Huson DH, Schütz M, Weidenmaier C, Autenrieth IB, Peter S.

Antimicrob Agents Chemother. 2015 Dec;59(12):7335-45. doi: 10.1128/AAC.01504-15. Epub 2015 Sep 14.

15.

Effects of surgical and dietary weight loss therapy for obesity on gut microbiota composition and nutrient absorption.

Damms-Machado A, Mitra S, Schollenberger AE, Kramer KM, Meile T, Königsrainer A, Huson DH, Bischoff SC.

Biomed Res Int. 2015;2015:806248. doi: 10.1155/2015/806248. Epub 2015 Feb 1.

16.

Fast and sensitive protein alignment using DIAMOND.

Buchfink B, Xie C, Huson DH.

Nat Methods. 2015 Jan;12(1):59-60. doi: 10.1038/nmeth.3176. Epub 2014 Nov 17.

PMID:
25402007
17.

Analysis of the intestinal microbiota using SOLiD 16S rRNA gene sequencing and SOLiD shotgun sequencing.

Mitra S, Förster-Fromme K, Damms-Machado A, Scheurenbrand T, Biskup S, Huson DH, Bischoff SC.

BMC Genomics. 2013;14 Suppl 5:S16. doi: 10.1186/1471-2164-14-S5-S16. Epub 2013 Oct 16.

18.

Microbial community analysis using MEGAN.

Huson DH, Weber N.

Methods Enzymol. 2013;531:465-85. doi: 10.1016/B978-0-12-407863-5.00021-6.

PMID:
24060133
19.

A poor man's BLASTX--high-throughput metagenomic protein database search using PAUDA.

Huson DH, Xie C.

Bioinformatics. 2014 Jan 1;30(1):38-9. doi: 10.1093/bioinformatics/btt254. Epub 2013 May 7.

20.

Identifying a species tree subject to random lateral gene transfer.

Steel M, Linz S, Huson DH, Sanderson MJ.

J Theor Biol. 2013 Apr 7;322:81-93. doi: 10.1016/j.jtbi.2013.01.009. Epub 2013 Jan 20.

PMID:
23340439

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