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Items: 1 to 20 of 635


Emerging pathogenic links between microbiota and the gut-lung axis.

Budden KF, Gellatly SL, Wood DL, Cooper MA, Morrison M, Hugenholtz P, Hansbro PM.

Nat Rev Microbiol. 2016 Oct 3. doi: 10.1038/nrmicro.2016.142.


Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota.

Vanwonterghem I, Evans PN, Parks DH, Jensen PD, Woodcroft BJ, Hugenholtz P, Tyson GW.

Nat Microbiol. 2016 Oct 3;1:16170. doi: 10.1038/nmicrobiol.2016.170.


Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics.

Rinke C, Low S, Woodcroft BJ, Raina JB, Skarshewski A, Le XH, Butler MK, Stocker R, Seymour J, Tyson GW, Hugenholtz P.

PeerJ. 2016 Sep 22;4:e2486. doi: 10.7717/peerj.2486.


Near complete genome sequence of the animal feed probiotic, Bacillus amyloliquefaciens H57.

Schofield BJ, Skarshewski A, Lachner N, Ouwerkerk D, Klieve AV, Dart P, Hugenholtz P.

Stand Genomic Sci. 2016 Sep 6;11(1):60. doi: 10.1186/s40793-016-0189-z. eCollection 2016.


Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals.

Ormerod KL, Wood DL, Lachner N, Gellatly SL, Daly JN, Parsons JD, Dal'Molin CG, Palfreyman RW, Nielsen LK, Cooper MA, Morrison M, Hansbro PM, Hugenholtz P.

Microbiome. 2016 Jul 7;4(1):36. doi: 10.1186/s40168-016-0181-2.


A catalogue of 136 microbial draft genomes from Red Sea metagenomes.

Haroon MF, Thompson LR, Parks DH, Hugenholtz P, Stingl U.

Sci Data. 2016 Jul 5;3:160050. doi: 10.1038/sdata.2016.50.


Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database.

Bissett A, Fitzgerald A, Meintjes T, Mele PM, Reith F, Dennis PG, Breed MF, Brown B, Brown MV, Brugger J, Byrne M, Caddy-Retalic S, Carmody B, Coates DJ, Correa C, Ferrari BC, Gupta VV, Hamonts K, Haslem A, Hugenholtz P, Karan M, Koval J, Lowe AJ, Macdonald S, McGrath L, Martin D, Morgan M, North KI, Paungfoo-Lonhienne C, Pendall E, Phillips L, Pirzl R, Powell JR, Ragan MA, Schmidt S, Seymour N, Snape I, Stephen JR, Stevens M, Tinning M, Williams K, Yeoh YK, Zammit CM, Young A.

Gigascience. 2016 May 18;5:21. doi: 10.1186/s13742-016-0126-5. eCollection 2016.


Genome-Based Microbial Taxonomy Coming of Age.

Hugenholtz P, Skarshewski A, Parks DH.

Cold Spring Harb Perspect Biol. 2016 Jun 1;8(6). pii: a018085. doi: 10.1101/cshperspect.a018085. Review.


Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines.

Vavourakis CD, Ghai R, Rodriguez-Valera F, Sorokin DY, Tringe SG, Hugenholtz P, Muyzer G.

Front Microbiol. 2016 Feb 25;7:211. doi: 10.3389/fmicb.2016.00211. eCollection 2016.


'Candidatus Adiutrix intracellularis', an endosymbiont of termite gut flagellates, is the first representative of a deep-branching clade of Deltaproteobacteria and a putative homoacetogen.

Ikeda-Ohtsubo W, Strassert JF, Köhler T, Mikaelyan A, Gregor I, McHardy AC, Tringe SG, Hugenholtz P, Radek R, Brune A.

Environ Microbiol. 2016 Sep;18(8):2548-64. doi: 10.1111/1462-2920.13234. Epub 2016 Apr 21.


High-resolution phylogenetic microbial community profiling.

Singer E, Bushnell B, Coleman-Derr D, Bowman B, Bowers RM, Levy A, Gies EA, Cheng JF, Copeland A, Klenk HP, Hallam SJ, Hugenholtz P, Tringe SG, Woyke T.

ISME J. 2016 Aug;10(8):2020-32. doi: 10.1038/ismej.2015.249. Epub 2016 Feb 9.


Chinese yellow wine.

Hugenholtz PG.

Acta Cardiol. 2016 Feb;71(1):1-2. doi: 10.2143/AC.71.1.3132090. No abstract available.


A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres.

Abdul Rahman N, Parks DH, Vanwonterghem I, Morrison M, Tyson GW, Hugenholtz P.

Front Microbiol. 2016 Jan 7;6:1469. doi: 10.3389/fmicb.2015.01469. eCollection 2015.


How can the European Society of Cardiology ensure compliance with ethical standards?

Simoons ML, Bassand JP, Bax J, Bertrand M, Breithardt G, Ferrari R, Fox K, Hugenholtz P, Komajda M, Pinto F, Rydén L, Tendera M, Vardas P.

Eur Heart J. 2016 Mar 1;37(9):741-4. doi: 10.1093/eurheartj/ehv651. Epub 2015 Dec 18. No abstract available.


Airway dysbiosis: Haemophilus influenzae and Tropheryma in poorly controlled asthma.

Simpson JL, Daly J, Baines KJ, Yang IA, Upham JW, Reynolds PN, Hodge S, James AL, Hugenholtz P, Willner D, Gibson PG.

Eur Respir J. 2016 Mar;47(3):792-800. doi: 10.1183/13993003.00405-2015. Epub 2015 Dec 2.


Comparative Genomics of Candidate Phylum TM6 Suggests That Parasitism Is Widespread and Ancestral in This Lineage.

Yeoh YK, Sekiguchi Y, Parks DH, Hugenholtz P.

Mol Biol Evol. 2016 Apr;33(4):915-27. doi: 10.1093/molbev/msv281. Epub 2015 Nov 28.


Evaluating DNA Extraction Methods for Community Profiling of Pig Hindgut Microbial Community.

Lu Y, Hugenholtz P, Batstone DJ.

PLoS One. 2015 Nov 11;10(11):e0142720. doi: 10.1371/journal.pone.0142720. eCollection 2015.


Comparative genomics of non-pseudomonal bacterial species colonising paediatric cystic fibrosis patients.

Ormerod KL, George NM, Fraser JA, Wainwright C, Hugenholtz P.

PeerJ. 2015 Sep 15;3:e1223. doi: 10.7717/peerj.1223. eCollection 2015.


Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains.

Whitman WB, Woyke T, Klenk HP, Zhou Y, Lilburn TG, Beck BJ, De Vos P, Vandamme P, Eisen JA, Garrity G, Hugenholtz P, Kyrpides NC.

Stand Genomic Sci. 2015 May 17;10:26. doi: 10.1186/s40793-015-0017-x. eCollection 2015.

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