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Items: 1 to 20 of 124


ST3268: a geographically widespread primate MRSA clone.

Hsu LY, Holden MTG, Koh TH, Pettigrew KA, Cao D, Hon PY, Sergio DM, Pena E, Ogden BE.

J Antimicrob Chemother. 2017 Apr 21. doi: 10.1093/jac/dkx120. [Epub ahead of print] No abstract available.


Whole-genome sequencing of a quarter-century melioidosis outbreak in temperate Australia uncovers a region of low-prevalence endemicity.

Chapple SN, Sarovich DS, Holden MT, Peacock SJ, Buller N, Golledge C, Mayo M, Currie BJ, Price EP.

Microb Genom. 2016 Jul 11;2(7):e000067. doi: 10.1099/mgen.0.000067. eCollection 2016 Jul.


Pan-genomic perspective on the evolution of the Staphylococcus aureus USA300 epidemic.

Jamrozy DM, Harris SR, Mohamed N, Peacock SJ, Tan CY, Parkhill J, Anderson AS, Holden MT.

Microb Genom. 2016 May 31;2(5):e000058. doi: 10.1099/mgen.0.000058. eCollection 2016 May.


Microreact: visualizing and sharing data for genomic epidemiology and phylogeography.

Argimón S, Abudahab K, Goater RJ, Fedosejev A, Bhai J, Glasner C, Feil EJ, Holden MT, Yeats CA, Grundmann H, Spratt BG, Aanensen DM.

Microb Genom. 2016 Nov 30;2(11):e000093. doi: 10.1099/mgen.0.000093. eCollection 2016 Nov.


Whole Genome Sequencing for Surveillance of Antimicrobial Resistance in Actinobacillus pleuropneumoniae.

Bossé JT, Li Y, Rogers J, Fernandez Crespo R, Li Y, Chaudhuri RR, Holden MT, Maskell DJ, Tucker AW, Wren BW, Rycroft AN, Langford PR.

Front Microbiol. 2017 Mar 6;8:311. doi: 10.3389/fmicb.2017.00311. eCollection 2017.


Global and regional dissemination and evolution of Burkholderia pseudomallei.

Chewapreecha C, Holden MT, Vehkala M, Välimäki N, Yang Z, Harris SR, Mather AE, Tuanyok A, De Smet B, Le Hello S, Bizet C, Mayo M, Wuthiekanun V, Limmathurotsakul D, Phetsouvanh R, Spratt BG, Corander J, Keim P, Dougan G, Dance DA, Currie BJ, Parkhill J, Peacock SJ.

Nat Microbiol. 2017 Jan 23;2:16263. doi: 10.1038/nmicrobiol.2016.263.


The role of whole genome sequencing in antimicrobial susceptibility testing of bacteria: report from the EUCAST Subcommittee.

Ellington MJ, Ekelund O, Aarestrup FM, Canton R, Doumith M, Giske C, Grundman H, Hasman H, Holden MT, Hopkins KL, Iredell J, Kahlmeter G, Köser CU, MacGowan A, Mevius D, Mulvey M, Naas T, Peto T, Rolain JM, Samuelsen Ø, Woodford N.

Clin Microbiol Infect. 2017 Jan;23(1):2-22. doi: 10.1016/j.cmi.2016.11.012. Epub 2016 Nov 23. Review.


Genomic insights into the emergence and spread of international clones of healthcare-, community- and livestock-associated meticillin-resistant Staphylococcus aureus: Blurring of the traditional definitions.

Bal AM, Coombs GW, Holden MT, Lindsay JA, Nimmo GR, Tattevin P, Skov RL.

J Glob Antimicrob Resist. 2016 Sep;6:95-101. doi: 10.1016/j.jgar.2016.04.004. Epub 2016 May 17. Review.


Genomics of Natural Populations of Staphylococcus aureus.

Fitzgerald JR, Holden MT.

Annu Rev Microbiol. 2016 Sep 8;70:459-78. doi: 10.1146/annurev-micro-102215-095547. Epub 2016 Jul 29.


ICEApl1, an Integrative Conjugative Element Related to ICEHin1056, Identified in the Pig Pathogen Actinobacillus pleuropneumoniae.

Bossé JT, Li Y, Fernandez Crespo R, Chaudhuri RR, Rogers J, Holden MT, Maskell DJ, Tucker AW, Wren BW, Rycroft AN, Langford PR; the BRaDP1T Consortium..

Front Microbiol. 2016 Jun 15;7:810. doi: 10.3389/fmicb.2016.00810. eCollection 2016.


Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive Staphylococcus aureus in Europe.

Aanensen DM, Feil EJ, Holden MT, Dordel J, Yeats CA, Fedosejev A, Goater R, Castillo-Ramírez S, Corander J, Colijn C, Chlebowicz MA, Schouls L, Heck M, Pluister G, Ruimy R, Kahlmeter G, Åhman J, Matuschek E, Friedrich AW, Parkhill J, Bentley SD, Spratt BG, Grundmann H; European SRL Working Group..

MBio. 2016 May 5;7(3). pii: e00444-16. doi: 10.1128/mBio.00444-16.


The Ess/Type VII secretion system of Staphylococcus aureus shows unexpected genetic diversity.

Warne B, Harkins CP, Harris SR, Vatsiou A, Stanley-Wall N, Parkhill J, Peacock SJ, Palmer T, Holden MT.

BMC Genomics. 2016 Mar 11;17:222. doi: 10.1186/s12864-016-2426-7.


Complete Genome Sequence of MIDG2331, a Genetically Tractable Serovar 8 Clinical Isolate of Actinobacillus pleuropneumoniae.

Bossé JT, Chaudhuri RR, Li Y, Leanse LG, Fernandez Crespo R, Coupland P, Holden MT, Bazzolli DM, Maskell DJ, Tucker AW, Wren BW, Rycroft AN, Langford PR.

Genome Announc. 2016 Jan 28;4(1). pii: e01667-15. doi: 10.1128/genomeA.01667-15.


Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland.

Reuter S, Török ME, Holden MT, Reynolds R, Raven KE, Blane B, Donker T, Bentley SD, Aanensen DM, Grundmann H, Feil EJ, Spratt BG, Parkhill J, Peacock SJ.

Genome Res. 2016 Feb;26(2):263-70. doi: 10.1101/gr.196709.115. Epub 2015 Dec 15.


Turner et al. Reply to "Emergence of the Same Successful Clade among Distinct Populations of emm89 Streptococcus pyogenes in Multiple Geographic Regions".

Turner CE, Lamagni T, Holden MT, David S, Jones MD, Game L, Efstratiou A, Sriskandan S.

MBio. 2015 Dec 1;6(6):e01883-15. doi: 10.1128/mBio.01883-15. No abstract available.


Whole genome investigation of a divergent clade of the pathogen Streptococcus suis.

Baig A, Weinert LA, Peters SE, Howell KJ, Chaudhuri RR, Wang J, Holden MT, Parkhill J, Langford PR, Rycroft AN, Wren BW, Tucker AW, Maskell DJ.

Front Microbiol. 2015 Nov 4;6:1191. doi: 10.3389/fmicb.2015.01191. eCollection 2015.


Photolithographic Synthesis of High-Density DNA and RNA Arrays on Flexible, Transparent, and Easily Subdivided Plastic Substrates.

Holden MT, Carter MC, Wu CH, Wolfer J, Codner E, Sussman MR, Lynn DM, Smith LM.

Anal Chem. 2015 Nov 17;87(22):11420-8. doi: 10.1021/acs.analchem.5b02893. Epub 2015 Nov 5.


Old Drugs To Treat Resistant Bugs: Methicillin-Resistant Staphylococcus aureus Isolates with mecC Are Susceptible to a Combination of Penicillin and Clavulanic Acid.

Ba X, Harrison EM, Lovering AL, Gleadall N, Zadoks R, Parkhill J, Peacock SJ, Holden MT, Paterson GK, Holmes MA.

Antimicrob Agents Chemother. 2015 Dec;59(12):7396-404. doi: 10.1128/AAC.01469-15. Epub 2015 Sep 21.


Development of a Multilocus Sequence Typing Scheme for Molecular Typing of Mycoplasma pneumoniae.

Brown RJ, Holden MT, Spiller OB, Chalker VJ.

J Clin Microbiol. 2015 Oct;53(10):3195-203. doi: 10.1128/JCM.01301-15. Epub 2015 Jul 22.


Roary: rapid large-scale prokaryote pan genome analysis.

Page AJ, Cummins CA, Hunt M, Wong VK, Reuter S, Holden MT, Fookes M, Falush D, Keane JA, Parkhill J.

Bioinformatics. 2015 Nov 15;31(22):3691-3. doi: 10.1093/bioinformatics/btv421. Epub 2015 Jul 20.

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