Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 20 of 76

1.

CYCLOPS reveals human transcriptional rhythms in health and disease.

Anafi RC, Francey LJ, Hogenesch JB, Kim J.

Proc Natl Acad Sci U S A. 2017 May 16;114(20):5312-5317. doi: 10.1073/pnas.1619320114. Epub 2017 Apr 24.

2.

Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation.

Love MI, Hogenesch JB, Irizarry RA.

Nat Biotechnol. 2016 Dec;34(12):1287-1291. doi: 10.1038/nbt.3682. Epub 2016 Sep 26.

3.

The Local Edge Machine: inference of dynamic models of gene regulation.

McGoff KA, Guo X, Deckard A, Kelliher CM, Leman AR, Francey LJ, Hogenesch JB, Haase SB, Harer JL.

Genome Biol. 2016 Oct 19;17(1):214.

4.

Deciphering the Duality of Clock and Growth Metabolism in a Cell Autonomous System Using NMR Profiling of the Secretome.

Sengupta A, Krishnaiah SY, Rhoades S, Growe J, Slaff B, Venkataraman A, Olarerin-George AO, Van Dang C, Hogenesch JB, Weljie AM.

Metabolites. 2016 Jul 27;6(3). pii: E23. doi: 10.3390/metabo6030023.

5.

Neural clocks and Neuropeptide F/Y regulate circadian gene expression in a peripheral metabolic tissue.

Erion R, King AN, Wu G, Hogenesch JB, Sehgal A.

Elife. 2016 Apr 14;5. pii: e13552. doi: 10.7554/eLife.13552.

6.

A new view of transcriptome complexity and regulation through the lens of local splicing variations.

Vaquero-Garcia J, Barrera A, Gazzara MR, González-Vallinas J, Lahens NF, Hogenesch JB, Lynch KW, Barash Y.

Elife. 2016 Feb 1;5:e11752. doi: 10.7554/eLife.11752.

7.

The Liver Clock Controls Cholesterol Homeostasis through Trib1 Protein-mediated Regulation of PCSK9/Low Density Lipoprotein Receptor (LDLR) Axis.

Ma D, Liu T, Chang L, Rui C, Xiao Y, Li S, Hogenesch JB, Chen YE, Lin JD.

J Biol Chem. 2015 Dec 25;290(52):31003-12. doi: 10.1074/jbc.M115.685982. Epub 2015 Nov 7.

8.

Ubiquitin ligase Siah2 regulates RevErbα degradation and the mammalian circadian clock.

DeBruyne JP, Baggs JE, Sato TK, Hogenesch JB.

Proc Natl Acad Sci U S A. 2015 Oct 6;112(40):12420-5. doi: 10.1073/pnas.1501204112. Epub 2015 Sep 21.

9.

MYC Disrupts the Circadian Clock and Metabolism in Cancer Cells.

Altman BJ, Hsieh AL, Sengupta A, Krishnanaiah SY, Stine ZE, Walton ZE, Gouw AM, Venkataraman A, Li B, Goraksha-Hicks P, Diskin SJ, Bellovin DI, Simon MC, Rathmell JC, Lazar MA, Maris JM, Felsher DW, Hogenesch JB, Weljie AM, Dang CV.

Cell Metab. 2015 Dec 1;22(6):1009-19. doi: 10.1016/j.cmet.2015.09.003. Epub 2015 Sep 17.

10.

Benchmark analysis of algorithms for determining and quantifying full-length mRNA splice forms from RNA-seq data.

Hayer KE, Pizarro A, Lahens NF, Hogenesch JB, Grant GR.

Bioinformatics. 2015 Dec 15;31(24):3938-45. doi: 10.1093/bioinformatics/btv488. Epub 2015 Sep 3.

11.

Ribosome profiling reveals an important role for translational control in circadian gene expression.

Jang C, Lahens NF, Hogenesch JB, Sehgal A.

Genome Res. 2015 Dec;25(12):1836-47. doi: 10.1101/gr.191296.115. Epub 2015 Sep 3.

12.

KPNB1 mediates PER/CRY nuclear translocation and circadian clock function.

Lee Y, Jang AR, Francey LJ, Sehgal A, Hogenesch JB.

Elife. 2015 Aug 29;4. doi: 10.7554/eLife.08647.

13.

Placental expression of miR-517a/b and miR-517c contributes to trophoblast dysfunction and preeclampsia.

Anton L, Olarerin-George AO, Hogenesch JB, Elovitz MA.

PLoS One. 2015 Mar 23;10(3):e0122707. doi: 10.1371/journal.pone.0122707. eCollection 2015.

14.

A genome-wide screen identifies PAPP-AA-mediated IGFR signaling as a novel regulator of habituation learning.

Wolman MA, Jain RA, Marsden KC, Bell H, Skinner J, Hayer KE, Hogenesch JB, Granato M.

Neuron. 2015 Mar 18;85(6):1200-11. doi: 10.1016/j.neuron.2015.02.025. Epub 2015 Mar 5. Erratum in: Neuron. 2015 Aug 19;87(4):906-7.

15.

Assessing the prevalence of mycoplasma contamination in cell culture via a survey of NCBI's RNA-seq archive.

Olarerin-George AO, Hogenesch JB.

Nucleic Acids Res. 2015 Mar 11;43(5):2535-42. doi: 10.1093/nar/gkv136. Epub 2015 Feb 24.

16.

Zebrafish foxc1a drives appendage-specific neural circuit development.

Banerjee S, Hayer K, Hogenesch JB, Granato M.

Development. 2015 Feb 15;142(4):753-62. doi: 10.1242/dev.115816.

17.

Pax3 and hippo signaling coordinate melanocyte gene expression in neural crest.

Manderfield LJ, Engleka KA, Aghajanian H, Gupta M, Yang S, Li L, Baggs JE, Hogenesch JB, Olson EN, Epstein JA.

Cell Rep. 2014 Dec 11;9(5):1885-95. doi: 10.1016/j.celrep.2014.10.061. Epub 2014 Nov 26.

18.

Detection theory in identification of RNA-DNA sequence differences using RNA-sequencing.

Toung JM, Lahens N, Hogenesch JB, Grant G.

PLoS One. 2014 Nov 14;9(11):e112040. doi: 10.1371/journal.pone.0112040. eCollection 2014.

19.

A circadian gene expression atlas in mammals: implications for biology and medicine.

Zhang R, Lahens NF, Ballance HI, Hughes ME, Hogenesch JB.

Proc Natl Acad Sci U S A. 2014 Nov 11;111(45):16219-24. doi: 10.1073/pnas.1408886111. Epub 2014 Oct 27.

20.

Role for LSM genes in the regulation of circadian rhythms.

Perez-Santángelo S, Mancini E, Francey LJ, Schlaen RG, Chernomoretz A, Hogenesch JB, Yanovsky MJ.

Proc Natl Acad Sci U S A. 2014 Oct 21;111(42):15166-71. doi: 10.1073/pnas.1409791111. Epub 2014 Oct 6.

Supplemental Content

Loading ...
Support Center