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Items: 1 to 20 of 55

1.

Gut Microbiome-Based Metagenomic Signature for Non-invasive Detection of Advanced Fibrosis in Human Nonalcoholic Fatty Liver Disease.

Loomba R, Seguritan V, Li W, Long T, Klitgord N, Bhatt A, Dulai PS, Caussy C, Bettencourt R, Highlander SK, Jones MB, Sirlin CB, Schnabl B, Brinkac L, Schork N, Chen CH, Brenner DA, Biggs W, Yooseph S, Venter JC, Nelson KE.

Cell Metab. 2017 May 2;25(5):1054-1062.e5. doi: 10.1016/j.cmet.2017.04.001.

PMID:
28467925
2.

A robust ambient temperature collection and stabilization strategy: Enabling worldwide functional studies of the human microbiome.

Anderson EL, Li W, Klitgord N, Highlander SK, Dayrit M, Seguritan V, Yooseph S, Biggs W, Venter JC, Nelson KE, Jones MB.

Sci Rep. 2016 Aug 25;6:31731. doi: 10.1038/srep31731.

3.

Gastrointestinal microbial populations can distinguish pediatric and adolescent Acute Lymphoblastic Leukemia (ALL) at the time of disease diagnosis.

Rajagopala SV, Yooseph S, Harkins DM, Moncera KJ, Zabokrtsky KB, Torralba MG, Tovchigrechko A, Highlander SK, Pieper R, Sender L, Nelson KE.

BMC Genomics. 2016 Aug 15;17(1):635. doi: 10.1186/s12864-016-2965-y.

4.

Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system.

Schloss PD, Jenior ML, Koumpouras CC, Westcott SL, Highlander SK.

PeerJ. 2016 Mar 28;4:e1869. doi: 10.7717/peerj.1869. eCollection 2016.

5.

Library preparation methodology can influence genomic and functional predictions in human microbiome research.

Jones MB, Highlander SK, Anderson EL, Li W, Dayrit M, Klitgord N, Fabani MM, Seguritan V, Green J, Pride DT, Yooseph S, Biggs W, Nelson KE, Venter JC.

Proc Natl Acad Sci U S A. 2015 Nov 10;112(45):14024-9. doi: 10.1073/pnas.1519288112. Epub 2015 Oct 28.

6.

MICROBIOME. A unified initiative to harness Earth's microbiomes.

Alivisatos AP, Blaser MJ, Brodie EL, Chun M, Dangl JL, Donohue TJ, Dorrestein PC, Gilbert JA, Green JL, Jansson JK, Knight R, Maxon ME, McFall-Ngai MJ, Miller JF, Pollard KS, Ruby EG, Taha SA; Unified Microbiome Initiative Consortium.

Science. 2015 Oct 30;350(6260):507-8. doi: 10.1126/science.aac8480. Epub 2015 Oct 28. No abstract available.

PMID:
26511287
7.

Acylation Enhances, but Is Not Required for, the Cytotoxic Activity of Mannheimia haemolytica Leukotoxin in Bighorn Sheep.

Batra SA, Shanthalingam S, Munske GR, Raghavan B, Kugadas A, Bavanthasivam J, Highlander SK, Srikumaran S.

Infect Immun. 2015 Oct;83(10):3982-8. doi: 10.1128/IAI.00733-15. Epub 2015 Jul 27.

8.

Extreme Sensory Complexity Encoded in the 10-Megabase Draft Genome Sequence of the Chromatically Acclimating Cyanobacterium Tolypothrix sp. PCC 7601.

Yerrapragada S, Shukla A, Hallsworth-Pepin K, Choi K, Wollam A, Clifton S, Qin X, Muzny D, Raghuraman S, Ashki H, Uzman A, Highlander SK, Fryszczyn BG, Fox GE, Tirumalai MR, Liu Y, Kim S, Kehoe DM, Weinstock GM.

Genome Announc. 2015 May 7;3(3). pii: e00355-15. doi: 10.1128/genomeA.00355-15.

9.

Characterization of the human gut microbiome during travelers' diarrhea.

Youmans BP, Ajami NJ, Jiang ZD, Campbell F, Wadsworth WD, Petrosino JF, DuPont HL, Highlander SK.

Gut Microbes. 2015;6(2):110-9. doi: 10.1080/19490976.2015.1019693.

10.

Molecular and evolutionary analysis of NEAr-iron Transporter (NEAT) domains.

Honsa ES, Maresso AW, Highlander SK.

PLoS One. 2014 Aug 25;9(8):e104794. doi: 10.1371/journal.pone.0104794. eCollection 2014.

11.

From prediction to function using evolutionary genomics: human-specific ecotypes of Lactobacillus reuteri have diverse probiotic functions.

Spinler JK, Sontakke A, Hollister EB, Venable SF, Oh PL, Balderas MA, Saulnier DM, Mistretta TA, Devaraj S, Walter J, Versalovic J, Highlander SK.

Genome Biol Evol. 2014 Jun 19;6(7):1772-89. doi: 10.1093/gbe/evu137.

12.

Phylogenomics and the dynamic genome evolution of the genus Streptococcus.

Richards VP, Palmer SR, Pavinski Bitar PD, Qin X, Weinstock GM, Highlander SK, Town CD, Burne RA, Stanhope MJ.

Genome Biol Evol. 2014 Apr;6(4):741-53. doi: 10.1093/gbe/evu048.

13.
14.

Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.

Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD.

Appl Environ Microbiol. 2013 Sep;79(17):5112-20. doi: 10.1128/AEM.01043-13. Epub 2013 Jun 21.

15.

High throughput sequencing methods for microbiome profiling: application to food animal systems.

Highlander SK.

Anim Health Res Rev. 2012 Jun;13(1):40-53. doi: 10.1017/S1466252312000126. Review.

PMID:
22853944
16.

Evaluation of 16S rDNA-based community profiling for human microbiome research.

Jumpstart Consortium Human Microbiome Project Data Generation Working Group.

PLoS One. 2012;7(6):e39315. doi: 10.1371/journal.pone.0039315. Epub 2012 Jun 13.

17.

A framework for human microbiome research.

Human Microbiome Project Consortium.

Nature. 2012 Jun 13;486(7402):215-21. doi: 10.1038/nature11209.

18.

Structure, function and diversity of the healthy human microbiome.

Human Microbiome Project Consortium.

Nature. 2012 Jun 13;486(7402):207-14. doi: 10.1038/nature11234.

19.

A snap-shot of Mannheimia hemolytica A1 gene expression during infection in the bovine host.

Sathiamoorthy S, Hodgins DC, Shewen PE, Highlander SK, Lo RY.

FEMS Microbiol Lett. 2011 Dec;325(2):148-54. doi: 10.1111/j.1574-6968.2011.02422.x.

20.

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.

Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G, Ciulla D, Tabbaa D, Highlander SK, Sodergren E, Methé B, DeSantis TZ; Human Microbiome Consortium, Petrosino JF, Knight R, Birren BW.

Genome Res. 2011 Mar;21(3):494-504. doi: 10.1101/gr.112730.110. Epub 2011 Jan 6.

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