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Items: 1 to 20 of 38

1.

De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species.

Carruthers M, Yurchenko AA, Augley JJ, Adams CE, Herzyk P, Elmer KR.

BMC Genomics. 2018 Jan 8;19(1):32. doi: 10.1186/s12864-017-4379-x.

2.

Metal selectivity determinants in a family of transition metal transporters.

Podar D, Scherer J, Noordally Z, Herzyk P, Nies D, Sanders D.

J Biol Chem. 2018 Jan 5;293(1):402. doi: 10.1074/jbc.AAC117.001146. No abstract available.

3.

RNASeq analysis of differentiated keratinocytes reveals a massive response to late events during human papillomavirus type 16 infection, including loss of epithelial barrier function.

Klymenko T, Gu Q, Herbert I, Stevenson A, Iliev V, Watkins G, Pollock C, Bhatia R, Cuschieri K, Herzyk P, Gatherer D, Graham SV.

J Virol. 2017 Oct 11. pii: JVI.01001-17. doi: 10.1128/JVI.01001-17. [Epub ahead of print]

4.

Sterol 14α-demethylase mutation leads to amphotericin B resistance in Leishmania mexicana.

Mwenechanya R, Kovářová J, Dickens NJ, Mudaliar M, Herzyk P, Vincent IM, Weidt SK, Burgess KE, Burchmore RJS, Pountain AW, Smith TK, Creek DJ, Kim DH, Lepesheva GI, Barrett MP.

PLoS Negl Trop Dis. 2017 Jun 16;11(6):e0005649. doi: 10.1371/journal.pntd.0005649. eCollection 2017 Jun.

5.

Regulation of transcription by the Arabidopsis UVR8 photoreceptor involves a specific histone modification.

Velanis CN, Herzyk P, Jenkins GI.

Plant Mol Biol. 2016 Nov;92(4-5):425-443. Epub 2016 Aug 17.

6.

Mastitomics, the integrated omics of bovine milk in an experimental model of Streptococcus uberis mastitis: 2. Label-free relative quantitative proteomics.

Mudaliar M, Tassi R, Thomas FC, McNeilly TN, Weidt SK, McLaughlin M, Wilson D, Burchmore R, Herzyk P, Eckersall PD, Zadoks RN.

Mol Biosyst. 2016 Aug 16;12(9):2748-61. doi: 10.1039/c6mb00290k.

8.

Use of bacterial whole-genome sequencing to investigate local persistence and spread in bovine tuberculosis.

Trewby H, Wright D, Breadon EL, Lycett SJ, Mallon TR, McCormick C, Johnson P, Orton RJ, Allen AR, Galbraith J, Herzyk P, Skuce RA, Biek R, Kao RR.

Epidemics. 2016 Mar;14:26-35. doi: 10.1016/j.epidem.2015.08.003. Epub 2015 Oct 19.

9.

Failure to interact with Brd4 alters the ability of HPV16 E2 to regulate host genome expression and cellular movement.

Gauson EJ, Wang X, Dornan ES, Herzyk P, Bristol M, Morgan IM.

Virus Res. 2016 Jan 4;211:1-8. doi: 10.1016/j.virusres.2015.09.008. Epub 2015 Sep 10.

10.

Regulation of human genome expression and RNA splicing by human papillomavirus 16 E2 protein.

Gauson EJ, Windle B, Donaldson MM, Caffarel MM, Dornan ES, Coleman N, Herzyk P, Henderson SC, Wang X, Morgan IM.

Virology. 2014 Nov;468-470:10-8. doi: 10.1016/j.virol.2014.07.022. Epub 2014 Aug 16.

11.

Insertional mutagenesis and deep profiling reveals gene hierarchies and a Myc/p53-dependent bottleneck in lymphomagenesis.

Huser CA, Gilroy KL, de Ridder J, Kilbey A, Borland G, Mackay N, Jenkins A, Bell M, Herzyk P, van der Weyden L, Adams DJ, Rust AG, Cameron E, Neil JC.

PLoS Genet. 2014 Feb 27;10(2):e1004167. doi: 10.1371/journal.pgen.1004167. eCollection 2014 Feb.

12.

Data-mining the FlyAtlas online resource to identify core functional motifs across transporting epithelia.

Chintapalli VR, Wang J, Herzyk P, Davies SA, Dow JA.

BMC Genomics. 2013 Jul 30;14:518. doi: 10.1186/1471-2164-14-518. Review.

13.

Hyperosmotic priming of Arabidopsis seedlings establishes a long-term somatic memory accompanied by specific changes of the epigenome.

Sani E, Herzyk P, Perrella G, Colot V, Amtmann A.

Genome Biol. 2013 Jun 14;14(6):R59. doi: 10.1186/gb-2013-14-6-r59.

14.

A genomics approach in determining nanotopographical effects on MSC phenotype.

Tsimbouri PM, Murawski K, Hamilton G, Herzyk P, Oreffo RO, Gadegaard N, Dalby MJ.

Biomaterials. 2013 Mar;34(9):2177-84. doi: 10.1016/j.biomaterials.2012.12.019. Epub 2013 Jan 9.

15.

Genomic analysis of the role of transcription factor C/EBPδ in the regulation of cell behaviour on nanometric grooves.

Wiejak J, Tsimbouri PM, Herzyk P, Dalby MJ, Hamilton G, Yarwood SJ.

Biomaterials. 2013 Mar;34(8):1967-79. doi: 10.1016/j.biomaterials.2012.11.036. Epub 2012 Dec 13.

16.

FlyAtlas: database of gene expression in the tissues of Drosophila melanogaster.

Robinson SW, Herzyk P, Dow JA, Leader DP.

Nucleic Acids Res. 2013 Jan;41(Database issue):D744-50. doi: 10.1093/nar/gks1141. Epub 2012 Nov 29.

17.

Anguillid herpesvirus 1 transcriptome.

van Beurden SJ, Gatherer D, Kerr K, Galbraith J, Herzyk P, Peeters BP, Rottier PJ, Engelsma MY, Davison AJ.

J Virol. 2012 Sep;86(18):10150-61. doi: 10.1128/JVI.01271-12. Epub 2012 Jul 11.

18.

Predicting the outer membrane proteome of Pasteurella multocida based on consensus prediction enhanced by results integration and manual confirmation.

E-komon T, Burchmore R, Herzyk P, Davies R.

BMC Bioinformatics. 2012 Apr 27;13:63. doi: 10.1186/1471-2105-13-63.

19.

Functional correlates of positional and gender-specific renal asymmetry in Drosophila.

Chintapalli VR, Terhzaz S, Wang J, Al Bratty M, Watson DG, Herzyk P, Davies SA, Dow JA.

PLoS One. 2012;7(4):e32577. doi: 10.1371/journal.pone.0032577. Epub 2012 Apr 4.

20.

Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes.

James AB, Syed NH, Bordage S, Marshall J, Nimmo GA, Jenkins GI, Herzyk P, Brown JW, Nimmo HG.

Plant Cell. 2012 Mar;24(3):961-81. doi: 10.1105/tpc.111.093948. Epub 2012 Mar 9.

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