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Items: 1 to 20 of 65

1.

Ultra-deep sequencing reveals pre-mRNA splicing as a sequence driven high-fidelity process.

Reynolds DJ, Hertel KJ.

PLoS One. 2019 Oct 3;14(10):e0223132. doi: 10.1371/journal.pone.0223132. eCollection 2019.

2.

Exon size and sequence conservation improves identification of splice-altering nucleotides.

Movassat M, Forouzmand E, Reese F, Hertel KJ.

RNA. 2019 Dec;25(12):1793-1805. doi: 10.1261/rna.070987.119. Epub 2019 Sep 25.

PMID:
31554659
3.

Combinatorial regulation of alternative splicing.

Shenasa H, Hertel KJ.

Biochim Biophys Acta Gene Regul Mech. 2019 Nov - Dec;1862(11-12):194392. doi: 10.1016/j.bbagrm.2019.06.003. Epub 2019 Jul 2. Review.

PMID:
31276857
4.

Pancreatic pericytes originate from the embryonic pancreatic mesenchyme.

Harari N, Sakhneny L, Khalifa-Malka L, Busch A, Hertel KJ, Hebrok M, Landsman L.

Dev Biol. 2019 May 1;449(1):14-20. doi: 10.1016/j.ydbio.2019.01.020. Epub 2019 Feb 13.

5.

Molecular Mechanisms for CFIm-Mediated Regulation of mRNA Alternative Polyadenylation.

Zhu Y, Wang X, Forouzmand E, Jeong J, Qiao F, Sowd GA, Engelman AN, Xie X, Hertel KJ, Shi Y.

Mol Cell. 2018 Jan 4;69(1):62-74.e4. doi: 10.1016/j.molcel.2017.11.031. Epub 2017 Dec 21.

6.

Isolation of Newly Transcribed RNA Using the Metabolic Label 4-Thiouridine.

Garibaldi A, Carranza F, Hertel KJ.

Methods Mol Biol. 2017;1648:169-176. doi: 10.1007/978-1-4939-7204-3_13.

7.

Preparation of Splicing Competent Nuclear Extract from Mammalian Cells and In Vitro Pre-mRNA Splicing Assay.

Movassat M, Shenasa H, Hertel KJ.

Methods Mol Biol. 2017;1648:11-26. doi: 10.1007/978-1-4939-7204-3_2.

8.

Release of SR Proteins from CLK1 by SRPK1: A Symbiotic Kinase System for Phosphorylation Control of Pre-mRNA Splicing.

Aubol BE, Wu G, Keshwani MM, Movassat M, Fattet L, Hertel KJ, Fu XD, Adams JA.

Mol Cell. 2016 Jul 21;63(2):218-228. doi: 10.1016/j.molcel.2016.05.034. Epub 2016 Jul 7.

9.

Coupling between alternative polyadenylation and alternative splicing is limited to terminal introns.

Movassat M, Crabb TL, Busch A, Yao C, Reynolds DJ, Shi Y, Hertel KJ.

RNA Biol. 2016 Jul 2;13(7):646-55. doi: 10.1080/15476286.2016.1191727. Epub 2016 May 31.

10.

The Silent Sway of Splicing by Synonymous Substitutions.

Mueller WF, Larsen LS, Garibaldi A, Hatfield GW, Hertel KJ.

J Biol Chem. 2015 Nov 13;290(46):27700-11. doi: 10.1074/jbc.M115.684035. Epub 2015 Sep 30.

11.

Splicing predictions reliably classify different types of alternative splicing.

Busch A, Hertel KJ.

RNA. 2015 May;21(5):813-23. doi: 10.1261/rna.048769.114. Epub 2015 Mar 24.

12.

The TCF C-clamp DNA binding domain expands the Wnt transcriptome via alternative target recognition.

Hoverter NP, Zeller MD, McQuade MM, Garibaldi A, Busch A, Selwan EM, Hertel KJ, Baldi P, Waterman ML.

Nucleic Acids Res. 2014 Dec 16;42(22):13615-32. doi: 10.1093/nar/gku1186. Epub 2014 Nov 20.

13.

Dicer regulates differentiation and viability during mouse pancreatic cancer initiation.

Morris JP 4th, Greer R, Russ HA, von Figura G, Kim GE, Busch A, Lee J, Hertel KJ, Kim S, McManus M, Hebrok M.

PLoS One. 2014 May 1;9(5):e95486. doi: 10.1371/journal.pone.0095486. eCollection 2014.

14.

The chromatin regulator Brg1 suppresses formation of intraductal papillary mucinous neoplasm and pancreatic ductal adenocarcinoma.

von Figura G, Fukuda A, Roy N, Liku ME, Morris Iv JP, Kim GE, Russ HA, Firpo MA, Mulvihill SJ, Dawson DW, Ferrer J, Mueller WF, Busch A, Hertel KJ, Hebrok M.

Nat Cell Biol. 2014 Mar;16(3):255-67. doi: 10.1038/ncb2916. Epub 2014 Feb 23.

15.

Kinetic analysis of in vitro pre-mRNA splicing in HeLa nuclear extract.

Mueller WF, Hertel KJ.

Methods Mol Biol. 2014;1126:161-8. doi: 10.1007/978-1-62703-980-2_12.

16.

In vitro assay of pre-mRNA splicing in mammalian nuclear extract.

Movassat M, Mueller WF, Hertel KJ.

Methods Mol Biol. 2014;1126:151-60. doi: 10.1007/978-1-62703-980-2_11.

17.

Preparation of splicing competent nuclear extracts.

Webb CH, Hertel KJ.

Methods Mol Biol. 2014;1126:117-21. doi: 10.1007/978-1-62703-980-2_8.

18.

Position-dependent splicing activation and repression by SR and hnRNP proteins rely on common mechanisms.

Erkelenz S, Mueller WF, Evans MS, Busch A, Schöneweis K, Hertel KJ, Schaal H.

RNA. 2013 Jan;19(1):96-102. doi: 10.1261/rna.037044.112. Epub 2012 Nov 21. Erratum in: RNA. 2013 Jul;19(7):1015.

19.

HEXEvent: a database of Human EXon splicing Events.

Busch A, Hertel KJ.

Nucleic Acids Res. 2013 Jan;41(Database issue):D118-24. doi: 10.1093/nar/gks969. Epub 2012 Oct 31.

20.

Extensive regulation of NAGNAG alternative splicing: new tricks for the spliceosome?

Busch A, Hertel KJ.

Genome Biol. 2012 Feb 22;13(2):143. doi: 10.1186/gb-2012-13-2-143.

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