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Items: 1 to 20 of 48

1.

A unique chromatin complex occupies young α-satellite arrays of human centromeres.

Henikoff JG, Thakur J, Kasinathan S, Henikoff S.

Sci Adv. 2015 Feb 12;1(1). pii: e1400234.

2.

The budding yeast Centromere DNA Element II wraps a stable Cse4 hemisome in either orientation in vivo.

Henikoff S, Ramachandran S, Krassovsky K, Bryson TD, Codomo CA, Brogaard K, Widom J, Wang JP, Henikoff JG.

Elife. 2014 Apr 15;3:e01861. doi: 10.7554/eLife.01861.

3.

The CentO satellite confers translational and rotational phasing on cenH3 nucleosomes in rice centromeres.

Zhang T, Talbert PB, Zhang W, Wu Y, Yang Z, Henikoff JG, Henikoff S, Jiang J.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):E4875-83. doi: 10.1073/pnas.1319548110. Epub 2013 Nov 4.

4.

"Point" centromeres of Saccharomyces harbor single centromere-specific nucleosomes.

Henikoff S, Henikoff JG.

Genetics. 2012 Apr;190(4):1575-7. doi: 10.1534/genetics.111.137711. Epub 2012 Jan 10.

5.

Tripartite organization of centromeric chromatin in budding yeast.

Krassovsky K, Henikoff JG, Henikoff S.

Proc Natl Acad Sci U S A. 2012 Jan 3;109(1):243-8. doi: 10.1073/pnas.1118898109. Epub 2011 Dec 19.

6.

Epigenome characterization at single base-pair resolution.

Henikoff JG, Belsky JA, Krassovsky K, MacAlpine DM, Henikoff S.

Proc Natl Acad Sci U S A. 2011 Nov 8;108(45):18318-23. doi: 10.1073/pnas.1110731108. Epub 2011 Oct 24.

7.

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K, Alves P, Chateigner A, Perry M, Morris M, Auerbach RK, Feng X, Leng J, Vielle A, Niu W, Rhrissorrakrai K, Agarwal A, Alexander RP, Barber G, Brdlik CM, Brennan J, Brouillet JJ, Carr A, Cheung MS, Clawson H, Contrino S, Dannenberg LO, Dernburg AF, Desai A, Dick L, Dosé AC, Du J, Egelhofer T, Ercan S, Euskirchen G, Ewing B, Feingold EA, Gassmann R, Good PJ, Green P, Gullier F, Gutwein M, Guyer MS, Habegger L, Han T, Henikoff JG, Henz SR, Hinrichs A, Holster H, Hyman T, Iniguez AL, Janette J, Jensen M, Kato M, Kent WJ, Kephart E, Khivansara V, Khurana E, Kim JK, Kolasinska-Zwierz P, Lai EC, Latorre I, Leahey A, Lewis S, Lloyd P, Lochovsky L, Lowdon RF, Lubling Y, Lyne R, MacCoss M, Mackowiak SD, Mangone M, McKay S, Mecenas D, Merrihew G, Miller DM 3rd, Muroyama A, Murray JI, Ooi SL, Pham H, Phippen T, Preston EA, Rajewsky N, Rätsch G, Rosenbaum H, Rozowsky J, Rutherford K, Ruzanov P, Sarov M, Sasidharan R, Sboner A, Scheid P, Segal E, Shin H, Shou C, Slack FJ, Slightam C, Smith R, Spencer WC, Stinson EO, Taing S, Takasaki T, Vafeados D, Voronina K, Wang G, Washington NL, Whittle CM, Wu B, Yan KK, Zeller G, Zha Z, Zhong M, Zhou X; modENCODE Consortium, Ahringer J, Strome S, Gunsalus KC, Micklem G, Liu XS, Reinke V, Kim SK, Hillier LW, Henikoff S, Piano F, Snyder M, Stein L, Lieb JD, Waterston RH.

Science. 2010 Dec 24;330(6012):1775-87. doi: 10.1126/science.1196914. Epub 2010 Dec 22. Erratum in: Science. 2011 Jan 7;331(6013):30.

8.

Identification of functional elements and regulatory circuits by Drosophila modENCODE.

modENCODE Consortium, Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, Robine N, Washington NL, Di Stefano L, Berezikov E, Brown CD, Candeias R, Carlson JW, Carr A, Jungreis I, Marbach D, Sealfon R, Tolstorukov MY, Will S, Alekseyenko AA, Artieri C, Booth BW, Brooks AN, Dai Q, Davis CA, Duff MO, Feng X, Gorchakov AA, Gu T, Henikoff JG, Kapranov P, Li R, MacAlpine HK, Malone J, Minoda A, Nordman J, Okamura K, Perry M, Powell SK, Riddle NC, Sakai A, Samsonova A, Sandler JE, Schwartz YB, Sher N, Spokony R, Sturgill D, van Baren M, Wan KH, Yang L, Yu C, Feingold E, Good P, Guyer M, Lowdon R, Ahmad K, Andrews J, Berger B, Brenner SE, Brent MR, Cherbas L, Elgin SC, Gingeras TR, Grossman R, Hoskins RA, Kaufman TC, Kent W, Kuroda MI, Orr-Weaver T, Perrimon N, Pirrotta V, Posakony JW, Ren B, Russell S, Cherbas P, Graveley BR, Lewis S, Micklem G, Oliver B, Park PJ, Celniker SE, Henikoff S, Karpen GH, Lai EC, MacAlpine DM, Stein LD, White KP, Kellis M.

Science. 2010 Dec 24;330(6012):1787-97. doi: 10.1126/science.1198374. Epub 2010 Dec 22.

9.

H2A.Z nucleosomes enriched over active genes are homotypic.

Weber CM, Henikoff JG, Henikoff S.

Nat Struct Mol Biol. 2010 Dec;17(12):1500-7. doi: 10.1038/nsmb.1926. Epub 2010 Nov 7.

10.

Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones.

Deal RB, Henikoff JG, Henikoff S.

Science. 2010 May 28;328(5982):1161-4. doi: 10.1126/science.1186777.

11.

A comprehensive map of insulator elements for the Drosophila genome.

Nègre N, Brown CD, Shah PK, Kheradpour P, Morrison CA, Henikoff JG, Feng X, Ahmad K, Russell S, White RA, Stein L, Henikoff S, Kellis M, White KP.

PLoS Genet. 2010 Jan 15;6(1):e1000814. doi: 10.1371/journal.pgen.1000814.

12.

A native chromatin purification system for epigenomic profiling in Caenorhabditis elegans.

Ooi SL, Henikoff JG, Henikoff S.

Nucleic Acids Res. 2010 Mar;38(4):e26. doi: 10.1093/nar/gkp1090. Epub 2009 Dec 4.

13.

Genome-wide profiling of salt fractions maps physical properties of chromatin.

Henikoff S, Henikoff JG, Sakai A, Loeb GB, Ahmad K.

Genome Res. 2009 Mar;19(3):460-9. doi: 10.1101/gr.087619.108. Epub 2008 Dec 16.

14.

Using the blocks database to recognize functional domains.

Henikoff JG, Greene EA, Taylor N, Henikoff S, Pietrokovski S.

Curr Protoc Bioinformatics. 2002 Aug;Chapter 2:Unit 2.2. doi: 10.1002/0471250953.bi0202s00.

PMID:
18792933
15.

Histone replacement marks the boundaries of cis-regulatory domains.

Mito Y, Henikoff JG, Henikoff S.

Science. 2007 Mar 9;315(5817):1408-11.

16.

High-throughput TILLING for Arabidopsis.

Till BJ, Colbert T, Codomo C, Enns L, Johnson J, Reynolds SH, Henikoff JG, Greene EA, Steine MN, Comai L, Henikoff S.

Methods Mol Biol. 2006;323:127-35.

PMID:
16739573
17.

Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis.

Tran RK, Zilberman D, de Bustos C, Ditt RF, Henikoff JG, Lindroth AM, Delrow J, Boyle T, Kwong S, Bryson TD, Jacobsen SE, Henikoff S.

Genome Biol. 2005;6(11):R90. Epub 2005 Oct 19.

18.

Genome-scale profiling of histone H3.3 replacement patterns.

Mito Y, Henikoff JG, Henikoff S.

Nat Genet. 2005 Oct;37(10):1090-7. Epub 2005 Sep 11.

PMID:
16155569
19.

DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes.

Tran RK, Henikoff JG, Zilberman D, Ditt RF, Jacobsen SE, Henikoff S.

Curr Biol. 2005 Jan 26;15(2):154-9.

20.

Suboptimal pharmacotherapeutic management of chronic stable angina in the primary care setting.

Wiest FC, Bryson CL, Burman M, McDonell MB, Henikoff JG, Fihn SD.

Am J Med. 2004 Aug 15;117(4):234-41.

PMID:
15308432

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