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Items: 1 to 20 of 36

1.

Single-Molecule Sequencing Reveals Estrogen-Regulated Clinically Relevant lncRNAs in Breast Cancer.

Jonsson P, Coarfa C, Mesmar F, Raz T, Rajapakshe K, Thompson JF, Gunaratne PH, Williams C.

Mol Endocrinol. 2015 Nov;29(11):1634-45. doi: 10.1210/me.2015-1153. Epub 2015 Oct 1.

2.
3.

Noncoding RNAs that associate with YB-1 alter proliferation in prostate cancer cells.

Liu TT, Arango-Argoty G, Li Z, Lin Y, Kim SW, Dueck A, Ozsolak F, Monaghan AP, Meister G, DeFranco DB, John B.

RNA. 2015 Jun;21(6):1159-72. doi: 10.1261/rna.045559.114. Epub 2015 Apr 22.

4.

Deadenylase depletion protects inherited mRNAs in primordial germ cells.

Swartz SZ, Reich AM, Oulhen N, Raz T, Milos PM, Campanale JP, Hamdoun A, Wessel GM.

Development. 2014 Aug;141(16):3134-42. doi: 10.1242/dev.110395.

5.

Quantitative polyadenylation site mapping with single-molecule direct RNA sequencing.

Ozsolak F.

Methods Mol Biol. 2014;1125:145-55. doi: 10.1007/978-1-62703-971-0_13.

PMID:
24590787
6.

Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast.

Geisberg JV, Moqtaderi Z, Fan X, Ozsolak F, Struhl K.

Cell. 2014 Feb 13;156(4):812-24. doi: 10.1016/j.cell.2013.12.026.

7.

Third-generation sequencing techniques and applications to drug discovery.

Ozsolak F.

Expert Opin Drug Discov. 2012 Mar;7(3):231-43. doi: 10.1517/17460441.2012.660145. Epub 2012 Feb 2. Review.

8.

Profiling of short RNAs using Helicos single-molecule sequencing.

Kapranov P, Ozsolak F, Milos PM.

Methods Mol Biol. 2012;822:219-32. doi: 10.1007/978-1-61779-427-8_15.

9.

Single-molecule direct RNA sequencing without cDNA synthesis.

Ozsolak F, Milos PM.

Wiley Interdiscip Rev RNA. 2011 Jul-Aug;2(4):565-70. doi: 10.1002/wrna.84. Epub 2011 Mar 14. Review.

10.

Native molecular state of adeno-associated viral vectors revealed by single-molecule sequencing.

Kapranov P, Chen L, Dederich D, Dong B, He J, Steinmann KE, Moore AR, Thompson JF, Milos PM, Xiao W.

Hum Gene Ther. 2012 Jan;23(1):46-55. doi: 10.1089/hum.2011.160. Epub 2011 Oct 4.

11.

Single-step capture and sequencing of natural DNA for detection of BRCA1 mutations.

Thompson JF, Reifenberger JG, Giladi E, Kerouac K, Gill J, Hansen E, Kahvejian A, Kapranov P, Knope T, Lipson D, Steinmann KE, Milos PM.

Genome Res. 2012 Feb;22(2):340-5. doi: 10.1101/gr.122192.111. Epub 2011 Jul 15.

12.

Protocol dependence of sequencing-based gene expression measurements.

Raz T, Kapranov P, Lipson D, Letovsky S, Milos PM, Thompson JF.

PLoS One. 2011 May 6;6(5):e19287. doi: 10.1371/journal.pone.0019287.

13.

Transcriptome profiling using single-molecule direct RNA sequencing.

Ozsolak F, Milos PM.

Methods Mol Biol. 2011;733:51-61. doi: 10.1007/978-1-61779-089-8_4.

14.

RNA sequencing and quantitation using the Helicos Genetic Analysis System.

Raz T, Causey M, Jones DR, Kieu A, Letovsky S, Lipson D, Thayer E, Thompson JF, Milos PM.

Methods Mol Biol. 2011;733:37-49. doi: 10.1007/978-1-61779-089-8_3.

PMID:
21431761
15.

Helicos single-molecule sequencing of bacterial genomes.

Steinmann KE, Hart CE, Thompson JF, Milos PM.

Methods Mol Biol. 2011;733:3-24. doi: 10.1007/978-1-61779-089-8_1.

PMID:
21431759
16.

The properties and applications of single-molecule DNA sequencing.

Thompson JF, Milos PM.

Genome Biol. 2011;12(2):217. doi: 10.1186/gb-2011-12-2-217. Epub 2011 Feb 24. Review.

17.

RNA sequencing: advances, challenges and opportunities.

Ozsolak F, Milos PM.

Nat Rev Genet. 2011 Feb;12(2):87-98. doi: 10.1038/nrg2934. Epub 2010 Dec 30. Review.

18.

The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA.

Kapranov P, St Laurent G, Raz T, Ozsolak F, Reynolds CP, Sorensen PH, Reaman G, Milos P, Arceci RJ, Thompson JF, Triche TJ.

BMC Biol. 2010 Dec 21;8:149. doi: 10.1186/1741-7007-8-149. Erratum in: BMC Biol. 2011;9:86.

19.

Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation.

Ozsolak F, Kapranov P, Foissac S, Kim SW, Fishilevich E, Monaghan AP, John B, Milos PM.

Cell. 2010 Dec 10;143(6):1018-29. doi: 10.1016/j.cell.2010.11.020.

20.

Error tolerant indexing and alignment of short reads with covering template families.

Giladi E, Healy J, Myers G, Hart C, Kapranov P, Lipson D, Roels S, Thayer E, Letovsky S.

J Comput Biol. 2010 Oct;17(10):1397-1411. doi: 10.1089/cmb.2010.0005.

PMID:
20937014

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