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Items: 13

1.

Computational Performance and Statistical Accuracy of *BEAST and Comparisons with Other Methods.

Ogilvie HA, Heled J, Xie D, Drummond AJ.

Syst Biol. 2016 May;65(3):381-96. doi: 10.1093/sysbio/syv118. Epub 2016 Jan 28.

2.

Evaluating a multigene environmental DNA approach for biodiversity assessment.

Drummond AJ, Newcomb RD, Buckley TR, Xie D, Dopheide A, Potter BC, Heled J, Ross HA, Tooman L, Grosser S, Park D, Demetras NJ, Stevens MI, Russell JC, Anderson SH, Carter A, Nelson N.

Gigascience. 2015 Oct 6;4:46. doi: 10.1186/s13742-015-0086-1. eCollection 2015.

3.

Calibrated birth-death phylogenetic time-tree priors for bayesian inference.

Heled J, Drummond AJ.

Syst Biol. 2015 May;64(3):369-83. doi: 10.1093/sysbio/syu089. Epub 2014 Nov 14. Erratum in: Syst Biol. 2016 Sep;65(5):943.

4.

BEAST 2: a software platform for Bayesian evolutionary analysis.

Bouckaert R, Heled J, K├╝hnert D, Vaughan T, Wu CH, Xie D, Suchard MA, Rambaut A, Drummond AJ.

PLoS Comput Biol. 2014 Apr 10;10(4):e1003537. doi: 10.1371/journal.pcbi.1003537. eCollection 2014 Apr.

5.

Looking for trees in the forest: summary tree from posterior samples.

Heled J, Bouckaert RR.

BMC Evol Biol. 2013 Oct 4;13:221. doi: 10.1186/1471-2148-13-221.

6.

Simulating gene trees under the multispecies coalescent and time-dependent migration.

Heled J, Bryant D, Drummond AJ.

BMC Evol Biol. 2013 Feb 18;13:44. doi: 10.1186/1471-2148-13-44.

7.

The pipid root.

Bewick AJ, Chain FJ, Heled J, Evans BJ.

Syst Biol. 2012 Dec 1;61(6):913-26. doi: 10.1093/sysbio/sys039. Epub 2012 Mar 20.

PMID:
22438331
8.

Sequence diversity under the multispecies coalescent with Yule process and constant population size.

Heled J.

Theor Popul Biol. 2012 Mar;81(2):97-101. doi: 10.1016/j.tpb.2011.12.007. Epub 2011 Dec 21.

PMID:
22210390
9.

Calibrated tree priors for relaxed phylogenetics and divergence time estimation.

Heled J, Drummond AJ.

Syst Biol. 2012 Jan;61(1):138-49. doi: 10.1093/sysbio/syr087. Epub 2011 Aug 18.

10.

Calibrating divergence times on species trees versus gene trees: implications for speciation history of Aphelocoma jays.

McCormack JE, Heled J, Delaney KS, Peterson AT, Knowles LL.

Evolution. 2011 Jan;65(1):184-202. doi: 10.1111/j.1558-5646.2010.01097.x.

11.

Bayesian inference of species trees from multilocus data.

Heled J, Drummond AJ.

Mol Biol Evol. 2010 Mar;27(3):570-80. doi: 10.1093/molbev/msp274. Epub 2009 Nov 11.

12.

Bayesian inference of population size history from multiple loci.

Heled J, Drummond AJ.

BMC Evol Biol. 2008 Oct 23;8:289. doi: 10.1186/1471-2148-8-289.

13.

The perils of plenty: what are we going to do with all these genes?

Rodrigo A, Bertels F, Heled J, Noder R, Shearman H, Tsai P.

Philos Trans R Soc Lond B Biol Sci. 2008 Dec 27;363(1512):3893-902. doi: 10.1098/rstb.2008.0173.

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