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Items: 14

1.

Stability-driven nonnegative matrix factorization to interpret spatial gene expression and build local gene networks.

Wu S, Joseph A, Hammonds AS, Celniker SE, Yu B, Frise E.

Proc Natl Acad Sci U S A. 2016 Apr 19;113(16):4290-5. doi: 10.1073/pnas.1521171113. Epub 2016 Apr 6.

2.

Diversity and dynamics of the Drosophila transcriptome.

Brown JB, Boley N, Eisman R, May GE, Stoiber MH, Duff MO, Booth BW, Wen J, Park S, Suzuki AM, Wan KH, Yu C, Zhang D, Carlson JW, Cherbas L, Eads BD, Miller D, Mockaitis K, Roberts J, Davis CA, Frise E, Hammonds AS, Olson S, Shenker S, Sturgill D, Samsonova AA, Weiszmann R, Robinson G, Hernandez J, Andrews J, Bickel PJ, Carninci P, Cherbas P, Gingeras TR, Hoskins RA, Kaufman TC, Lai EC, Oliver B, Perrimon N, Graveley BR, Celniker SE.

Nature. 2014 Aug 28;512(7515):393-9.

3.

Toll mediated infection response is altered by gravity and spaceflight in Drosophila.

Taylor K, Kleinhesselink K, George MD, Morgan R, Smallwood T, Hammonds AS, Fuller PM, Saelao P, Alley J, Gibbs AG, Hoshizaki DK, von Kalm L, Fuller CA, Beckingham KM, Kimbrell DA.

PLoS One. 2014 Jan 24;9(1):e86485. doi: 10.1371/journal.pone.0086485. eCollection 2014.

4.

Spatial expression of transcription factors in Drosophila embryonic organ development.

Hammonds AS, Bristow CA, Fisher WW, Weiszmann R, Wu S, Hartenstein V, Kellis M, Yu B, Frise E, Celniker SE.

Genome Biol. 2013 Dec 20;14(12):R140. doi: 10.1186/gb-2013-14-12-r140.

5.

DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila.

Fisher WW, Li JJ, Hammonds AS, Brown JB, Pfeiffer BD, Weiszmann R, MacArthur S, Thomas S, Stamatoyannopoulos JA, Eisen MB, Bickel PJ, Biggin MD, Celniker SE.

Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21330-5. doi: 10.1073/pnas.1209589110. Epub 2012 Dec 10.

6.

Development of expression-ready constructs for generation of proteomic libraries.

Yu C, Wan KH, Hammonds AS, Stapleton M, Carlson JW, Celniker SE.

Methods Mol Biol. 2011;723:257-72. doi: 10.1007/978-1-61779-043-0_17.

PMID:
21370071
7.

Quantitative analysis of the Drosophila segmentation regulatory network using pattern generating potentials.

Kazemian M, Blatti C, Richards A, McCutchan M, Wakabayashi-Ito N, Hammonds AS, Celniker SE, Kumar S, Wolfe SA, Brodsky MH, Sinha S.

PLoS Biol. 2010 Aug 17;8(8). pii: e1000456. doi: 10.1371/journal.pbio.1000456. Erratum in: PLoS Biol. 2013 Oct;11(10). doi: 10.1371/annotation/e38f4ae8-0776-42e6-b912-50800f54436e.

8.

Systematic image-driven analysis of the spatial Drosophila embryonic expression landscape.

Frise E, Hammonds AS, Celniker SE.

Mol Syst Biol. 2010;6:345. doi: 10.1038/msb.2009.102. Epub 2010 Jan 19.

9.

Determination of gene expression patterns using high-throughput RNA in situ hybridization to whole-mount Drosophila embryos.

Weiszmann R, Hammonds AS, Celniker SE.

Nat Protoc. 2009;4(5):605-18. doi: 10.1038/nprot.2009.55.

10.

Tools for neuroanatomy and neurogenetics in Drosophila.

Pfeiffer BD, Jenett A, Hammonds AS, Ngo TT, Misra S, Murphy C, Scully A, Carlson JW, Wan KH, Laverty TR, Mungall C, Svirskas R, Kadonaga JT, Doe CQ, Eisen MB, Celniker SE, Rubin GM.

Proc Natl Acad Sci U S A. 2008 Jul 15;105(28):9715-20. doi: 10.1073/pnas.0803697105. Epub 2008 Jul 9.

11.
12.

Characterization of IMP-E3, a gene active during imaginal disc morphogenesis in Drosophila melanogaster.

Moore JT, Fristrom D, Hammonds AS, Fristrom JW.

Dev Genet. 1990;11(4):299-309.

PMID:
2128624
13.

Isolation of genes active during hormone-induced morphogenesis in Drosophila imaginal discs.

Natzle JE, Hammonds AS, Fristrom JW.

J Biol Chem. 1986 Apr 25;261(12):5575-83.

14.

beta-Endorphin and deletion peptides. A correlation of opiate receptor affinity with helix potential.

Hammonds RG Jr, Hammonds AS, Ling N, Puett D.

J Biol Chem. 1982 Mar 25;257(6):2990-5. No abstract available.

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