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Items: 8

1.

Preferential binding of a stable G3BP ribonucleoprotein complex to intron-retaining transcripts in mouse brain and modulation of their expression in the cerebellum.

Martin S, Bellora N, González-Vallinas J, Irimia M, Chebli K, de Toledo M, Raabe M, Eyras E, Urlaub H, Blencowe BJ, Tazi J.

J Neurochem. 2016 Nov;139(3):349-368. doi: 10.1111/jnc.13768. Epub 2016 Oct 18.

2.

A new view of transcriptome complexity and regulation through the lens of local splicing variations.

Vaquero-Garcia J, Barrera A, Gazzara MR, González-Vallinas J, Lahens NF, Hogenesch JB, Lynch KW, Barash Y.

Elife. 2016 Feb 1;5:e11752. doi: 10.7554/eLife.11752.

3.

A semi-supervised approach uncovers thousands of intragenic enhancers differentially activated in human cells.

González-Vallinas J, Pagès A, Singh B, Eyras E.

BMC Genomics. 2015 Jul 14;16:523. doi: 10.1186/s12864-015-1704-0.

4.

AVISPA: a web tool for the prediction and analysis of alternative splicing.

Barash Y, Vaquero-Garcia J, González-Vallinas J, Xiong HY, Gao W, Lee LJ, Frey BJ.

Genome Biol. 2013;14(10):R114.

5.

Nucleosome-driven transcription factor binding and gene regulation.

Ballaré C, Castellano G, Gaveglia L, Althammer S, González-Vallinas J, Eyras E, Le Dily F, Zaurin R, Soronellas D, Vicent GP, Beato M.

Mol Cell. 2013 Jan 10;49(1):67-79. doi: 10.1016/j.molcel.2012.10.019. Epub 2012 Nov 21.

6.

Hog1 bypasses stress-mediated down-regulation of transcription by RNA polymerase II redistribution and chromatin remodeling.

Nadal-Ribelles M, Conde N, Flores O, González-Vallinas J, Eyras E, Orozco M, de Nadal E, Posas F.

Genome Biol. 2012 Nov 18;13(11):R106. doi: 10.1186/gb-2012-13-11-r106.

7.

Use of ChIP-Seq data for the design of a multiple promoter-alignment method.

Erb I, González-Vallinas JR, Bussotti G, Blanco E, Eyras E, Notredame C.

Nucleic Acids Res. 2012 Apr;40(7):e52. doi: 10.1093/nar/gkr1292. Epub 2012 Jan 9.

8.

Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data.

Althammer S, González-Vallinas J, Ballaré C, Beato M, Eyras E.

Bioinformatics. 2011 Dec 15;27(24):3333-40. doi: 10.1093/bioinformatics/btr570. Epub 2011 Oct 12.

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