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Items: 1 to 20 of 27

1.

Atopic Dermatitis Susceptibility Variants In Filaggrin Hitchhike Hornerin Selective Sweep.

Eaaswarkhanth M, Xu D, Flanagan C, Rzhetskaya M, Hayes MG, Blekhman R, Jablonski N, Gokcumen O.

Genome Biol Evol. 2016 Sep 27. pii: evw242. [Epub ahead of print]

2.

Recent evolution of the salivary mucin MUC7.

Xu D, Pavlidis P, Thamadilok S, Redwood E, Fox S, Blekhman R, Ruhl S, Gokcumen O.

Sci Rep. 2016 Aug 25;6:31791. doi: 10.1038/srep31791.

3.

Next-generation sequencing-based detection of germline L1-mediated transductions.

Tica J, Lee E, Untergasser A, Meiers S, Garfield DA, Gokcumen O, Furlong EE, Park PJ, Stütz AM, Korbel JO.

BMC Genomics. 2016 May 10;17:342. doi: 10.1186/s12864-016-2670-x.

4.

Global Survey of Variation in a Human Olfactory Receptor Gene Reveals Signatures of Non-Neutral Evolution.

Hoover KC, Gokcumen O, Qureshy Z, Bruguera E, Savangsuksa A, Cobb M, Matsunami H.

Chem Senses. 2015 Sep;40(7):481-8. doi: 10.1093/chemse/bjv030. Epub 2015 Jun 13.

5.

Geographic distribution and adaptive significance of genomic structural variants: an anthropological genetics perspective.

Eaaswarkhanth M, Pavlidis P, Gokcumen O.

Hum Biol. 2014 Fall;86(4):260-75. Review.

PMID:
25959693
6.

The evolution and functional impact of human deletion variants shared with archaic hominin genomes.

Lin YL, Pavlidis P, Karakoc E, Ajay J, Gokcumen O.

Mol Biol Evol. 2015 Apr;32(4):1008-19. doi: 10.1093/molbev/msu405. Epub 2015 Jan 2.

7.

Whole genome sequencing of Turkish genomes reveals functional private alleles and impact of genetic interactions with Europe, Asia and Africa.

Alkan C, Kavak P, Somel M, Gokcumen O, Ugurlu S, Saygi C, Dal E, Bugra K, Güngör T, Sahinalp SC, Özören N, Bekpen C.

BMC Genomics. 2014 Nov 7;15:963. doi: 10.1186/1471-2164-15-963.

8.

Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division.

Abyzov A, Iskow R, Gokcumen O, Radke DW, Balasubramanian S, Pei B, Habegger L; 1000 Genomes Project Consortium, Lee C, Gerstein M.

Genome Res. 2013 Dec;23(12):2042-52. doi: 10.1101/gr.154625.113. Epub 2013 Sep 11.

9.

Primate genome architecture influences structural variation mechanisms and functional consequences.

Gokcumen O, Tischler V, Tica J, Zhu Q, Iskow RC, Lee E, Fritz MH, Langdon A, Stütz AM, Pavlidis P, Benes V, Mills RE, Park PJ, Lee C, Korbel JO.

Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15764-9. doi: 10.1073/pnas.1305904110. Epub 2013 Sep 6.

10.

Vif proteins from diverse primate lentiviral lineages use the same binding site in APOBEC3G.

Letko M, Silvestri G, Hahn BH, Bibollet-Ruche F, Gokcumen O, Simon V, Ooms M.

J Virol. 2013 Nov;87(21):11861-71. doi: 10.1128/JVI.01944-13. Epub 2013 Aug 28.

11.

Balancing selection on a regulatory region exhibiting ancient variation that predates human-neandertal divergence.

Gokcumen O, Zhu Q, Mulder LC, Iskow RC, Austermann C, Scharer CD, Raj T, Boss JM, Sunyaev S, Price A, Stranger B, Simon V, Lee C.

PLoS Genet. 2013 Apr;9(4):e1003404. doi: 10.1371/journal.pgen.1003404. Epub 2013 Apr 11.

12.

Impact of constitutional copy number variants on biological pathway evolution.

Poptsova M, Banerjee S, Gokcumen O, Rubin MA, Demichelis F.

BMC Evol Biol. 2013 Jan 23;13:19. doi: 10.1186/1471-2148-13-19.

13.

Regulatory element copy number differences shape primate expression profiles.

Iskow RC, Gokcumen O, Abyzov A, Malukiewicz J, Zhu Q, Sukumar AT, Pai AA, Mills RE, Habegger L, Cusanovich DA, Rubel MA, Perry GH, Gerstein M, Stone AC, Gilad Y, Lee C.

Proc Natl Acad Sci U S A. 2012 Jul 31;109(31):12656-61. doi: 10.1073/pnas.1205199109. Epub 2012 Jul 13.

14.

Landscape of somatic retrotransposition in human cancers.

Lee E, Iskow R, Yang L, Gokcumen O, Haseley P, Luquette LJ 3rd, Lohr JG, Harris CC, Ding L, Wilson RK, Wheeler DA, Gibbs RA, Kucherlapati R, Lee C, Kharchenko PV, Park PJ; Cancer Genome Atlas Research Network.

Science. 2012 Aug 24;337(6097):967-71. doi: 10.1126/science.1222077. Epub 2012 Jun 28.

15.

Exploring the role of copy number variants in human adaptation.

Iskow RC, Gokcumen O, Lee C.

Trends Genet. 2012 Jun;28(6):245-57. doi: 10.1016/j.tig.2012.03.002. Epub 2012 Apr 5. Review.

16.

Mitochondrial DNA and Y chromosome variation provides evidence for a recent common ancestry between Native Americans and Indigenous Altaians.

Dulik MC, Zhadanov SI, Osipova LP, Askapuli A, Gau L, Gokcumen O, Rubinstein S, Schurr TG.

Am J Hum Genet. 2012 Feb 10;90(2):229-46. doi: 10.1016/j.ajhg.2011.12.014. Epub 2012 Jan 25. Erratum in: Am J Hum Genet. 2012 Mar 9;90(3):573.

17.

Extensive genetic diversity and substructuring among zebrafish strains revealed through copy number variant analysis.

Brown KH, Dobrinski KP, Lee AS, Gokcumen O, Mills RE, Shi X, Chong WW, Chen JY, Yoo P, David S, Peterson SM, Raj T, Choy KW, Stranger BE, Williamson RE, Zon LI, Freeman JL, Lee C.

Proc Natl Acad Sci U S A. 2012 Jan 10;109(2):529-34. doi: 10.1073/pnas.1112163109. Epub 2011 Dec 27.

18.

Extensive genomic and transcriptional diversity identified through massively parallel DNA and RNA sequencing of eighteen Korean individuals.

Ju YS, Kim JI, Kim S, Hong D, Park H, Shin JY, Lee S, Lee WC, Kim S, Yu SB, Park SS, Seo SH, Yun JY, Kim HJ, Lee DS, Yavartanoo M, Kang HP, Gokcumen O, Govindaraju DR, Jung JH, Chong H, Yang KS, Kim H, Lee C, Seo JS.

Nat Genet. 2011 Jul 3;43(8):745-52. doi: 10.1038/ng.872.

PMID:
21725310
19.

Refinement of primate copy number variation hotspots identifies candidate genomic regions evolving under positive selection.

Gokcumen O, Babb PL, Iskow RC, Zhu Q, Shi X, Mills RE, Ionita-Laza I, Vallender EJ, Clark AG, Johnson WE, Lee C.

Genome Biol. 2011;12(5):R52. doi: 10.1186/gb-2011-12-5-r52. Epub 2011 May 31.

20.
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