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Items: 11

1.

Translation elicits a growth rate-dependent, genome-wide, differential protein production in Bacillus subtilis.

Borkowski O, Goelzer A, Schaffer M, Calabre M, Mäder U, Aymerich S, Jules M, Fromion V.

Mol Syst Biol. 2016 May 17;12(5):870. doi: 10.15252/msb.20156608.

2.

Reconstruction of the Regulatory Network for Bacillus subtilis and Reconciliation with Gene Expression Data.

Faria JP, Overbeek R, Taylor RC, Conrad N, Vonstein V, Goelzer A, Fromion V, Rocha M, Rocha I, Henry CS.

Front Microbiol. 2016 Mar 18;7:275. doi: 10.3389/fmicb.2016.00275.

3.

Quantitative prediction of genome-wide resource allocation in bacteria.

Goelzer A, Muntel J, Chubukov V, Jules M, Prestel E, Nölker R, Mariadassou M, Aymerich S, Hecker M, Noirot P, Becher D, Fromion V.

Metab Eng. 2015 Nov;32:232-43. doi: 10.1016/j.ymben.2015.10.003.

PMID:
26498510
4.

Comprehensive absolute quantification of the cytosolic proteome of Bacillus subtilis by data independent, parallel fragmentation in liquid chromatography/mass spectrometry (LC/MS(E)).

Muntel J, Fromion V, Goelzer A, Maaβ S, Mäder U, Büttner K, Hecker M, Becher D.

Mol Cell Proteomics. 2014 Apr;13(4):1008-19. doi: 10.1074/mcp.M113.032631.

5.

A comparative transcriptomic, fluxomic and metabolomic analysis of the response of Saccharomyces cerevisiae to increases in NADPH oxidation.

Celton M, Sanchez I, Goelzer A, Fromion V, Camarasa C, Dequin S.

BMC Genomics. 2012 Jul 17;13:317. doi: 10.1186/1471-2164-13-317.

6.

BasyLiCA: a tool for automatic processing of a Bacterial Live Cell Array.

Aïchaoui L, Jules M, Le Chat L, Aymerich S, Fromion V, Goelzer A.

Bioinformatics. 2012 Oct 15;28(20):2705-6. doi: 10.1093/bioinformatics/bts422.

7.

A constraint-based model analysis of the metabolic consequences of increased NADPH oxidation in Saccharomyces cerevisiae.

Celton M, Goelzer A, Camarasa C, Fromion V, Dequin S.

Metab Eng. 2012 Jul;14(4):366-79. doi: 10.1016/j.ymben.2012.03.008.

PMID:
22709677
8.

Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.

Nicolas P, Mäder U, Dervyn E, Rochat T, Leduc A, Pigeonneau N, Bidnenko E, Marchadier E, Hoebeke M, Aymerich S, Becher D, Bisicchia P, Botella E, Delumeau O, Doherty G, Denham EL, Fogg MJ, Fromion V, Goelzer A, Hansen A, Härtig E, Harwood CR, Homuth G, Jarmer H, Jules M, Klipp E, Le Chat L, Lecointe F, Lewis P, Liebermeister W, March A, Mars RA, Nannapaneni P, Noone D, Pohl S, Rinn B, Rügheimer F, Sappa PK, Samson F, Schaffer M, Schwikowski B, Steil L, Stülke J, Wiegert T, Devine KM, Wilkinson AJ, van Dijl JM, Hecker M, Völker U, Bessières P, Noirot P.

Science. 2012 Mar 2;335(6072):1103-6. doi: 10.1126/science.1206848.

9.

Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism.

Buescher JM, Liebermeister W, Jules M, Uhr M, Muntel J, Botella E, Hessling B, Kleijn RJ, Le Chat L, Lecointe F, Mäder U, Nicolas P, Piersma S, Rügheimer F, Becher D, Bessieres P, Bidnenko E, Denham EL, Dervyn E, Devine KM, Doherty G, Drulhe S, Felicori L, Fogg MJ, Goelzer A, Hansen A, Harwood CR, Hecker M, Hubner S, Hultschig C, Jarmer H, Klipp E, Leduc A, Lewis P, Molina F, Noirot P, Peres S, Pigeonneau N, Pohl S, Rasmussen S, Rinn B, Schaffer M, Schnidder J, Schwikowski B, Van Dijl JM, Veiga P, Walsh S, Wilkinson AJ, Stelling J, Aymerich S, Sauer U.

Science. 2012 Mar 2;335(6072):1099-103. doi: 10.1126/science.1206871.

10.

Bacterial growth rate reflects a bottleneck in resource allocation.

Goelzer A, Fromion V.

Biochim Biophys Acta. 2011 Oct;1810(10):978-88. doi: 10.1016/j.bbagen.2011.05.014. Review.

PMID:
21689729
11.

Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis.

Goelzer A, Bekkal Brikci F, Martin-Verstraete I, Noirot P, Bessières P, Aymerich S, Fromion V.

BMC Syst Biol. 2008 Feb 26;2:20. doi: 10.1186/1752-0509-2-20.

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