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Items: 19

1.

Molecular Dissection of Induced Platinum Resistance through Functional and Gene Expression Analysis in a Cell Culture Model of Bladder Cancer.

Wang S, Zhang H, Scharadin TM, Zimmermann M, Hu B, Pan AW, Vinall R, Lin TY, Cimino G, Chain P, Vuyisich M, Gleasner C, Mcmurry K, Malfatti M, Turteltaub K, de Vere White R, Pan CX, Henderson PT.

PLoS One. 2016 Jan 22;11(1):e0146256. doi: 10.1371/journal.pone.0146256. eCollection 2016.

2.

Genome Sequence of a Chromium-Reducing Strain, Bacillus cereus S612.

Wang D, Boukhalfa H, Ware DS, Reimus PW, Daligault HE, Gleasner CD, Johnson SL, Li PE.

Genome Announc. 2015 Dec 10;3(6). pii: e01392-15. doi: 10.1128/genomeA.01392-15.

3.

Genome Sequence of Bacillus alveayuensis Strain 24KAM51, a Halotolerant Thermophile Isolated from a Hydrothermal Vent.

Filippidou S, Wunderlin T, Junier T, Jeanneret N, Johnson S, McMurry K, Gleasner CD, Lo CC, Li PE, Vuyisich M, Chain PS, Junier P.

Genome Announc. 2015 Aug 27;3(4). pii: e00982-15. doi: 10.1128/genomeA.00982-15.

4.

Genome Sequence of Aeribacillus pallidus Strain GS3372, an Endospore-Forming Bacterium Isolated in a Deep Geothermal Reservoir.

Filippidou S, Jaussi M, Junier T, Wunderlin T, Jeanneret N, Regenspurg S, Li PE, Lo CC, Johnson S, McMurry K, Gleasner CD, Vuyisich M, Chain PS, Junier P.

Genome Announc. 2015 Aug 27;3(4). pii: e00981-15. doi: 10.1128/genomeA.00981-15.

5.

Genome Sequence of Anoxybacillus geothermalis Strain GSsed3, a Novel Thermophilic Endospore-Forming Species.

Filippidou S, Jaussi M, Junier T, Wunderlin T, Roussel-Delif L, Jeanneret N, Vieth-Hillebrand A, Vetter A, Regenspurg S, Johnson SL, McMurry K, Gleasner CD, Lo CC, Li P, Vuyisich M, Chain PS, Junier P.

Genome Announc. 2015 Jun 11;3(3). pii: e00575-15. doi: 10.1128/genomeA.00575-15.

6.

Forest floor community metatranscriptomes identify fungal and bacterial responses to N deposition in two maple forests.

Hesse CN, Mueller RC, Vuyisich M, Gallegos-Graves LV, Gleasner CD, Zak DR, Kuske CR.

Front Microbiol. 2015 Apr 23;6:337. doi: 10.3389/fmicb.2015.00337. eCollection 2015.

7.

Draft Genome Sequence of Thauera sp. Strain SWB20, Isolated from a Singapore Wastewater Treatment Facility Using Gel Microdroplets.

Dichosa AE, Davenport KW, Li PE, Ahmed SA, Daligault H, Gleasner CD, Kunde Y, McMurry K, Lo CC, Reitenga KG, Daughton AR, Shen X, Frietze S, Wang D, Johnson SL, Drautz-Moses DI, Schuster S, Chain PS, Han C.

Genome Announc. 2015 Mar 19;3(2). pii: e00132-15. doi: 10.1128/genomeA.00132-15.

8.

Draft Genome Sequence of Enterobacter cloacae Strain S611.

Wang D, Han CS, Dichosa AE, Gleasner CD, Johnson SL, Daligault HE, Davenport KW, Li PE, Pierson EA, Pierson LS 3rd.

Genome Announc. 2014 Dec 11;2(6). pii: e00710-14. doi: 10.1128/genomeA.00710-14.

9.

Facile, high quality sequencing of bacterial genomes from small amounts of DNA.

Vuyisich M, Arefin A, Davenport K, Feng S, Gleasner C, McMurry K, Parson-Quintana B, Price J, Scholz M, Chain P.

Int J Genomics. 2014;2014:434575. doi: 10.1155/2014/434575. Epub 2014 Nov 13.

10.

The antibody mining toolbox: an open source tool for the rapid analysis of antibody repertoires.

D'Angelo S, Glanville J, Ferrara F, Naranjo L, Gleasner CD, Shen X, Bradbury AR, Kiss C.

MAbs. 2014 Jan-Feb;6(1):160-72. doi: 10.4161/mabs.27105.

11.

Draft Genome Sequence of Pseudomonas putida Strain S610, a Seed-Borne Bacterium of Wheat.

Wang D, Han CS, Dichosa AE, Gleasner CD, Johnson SL, Daligault HE, Davenport KW, Li PE, Pierson EA, Pierson LS 3rd.

Genome Announc. 2013 Dec 26;1(6). pii: e01048-13. doi: 10.1128/genomeA.01048-13.

12.

Complete genome sequence of Halorhodospira halophila SL1.

Challacombe JF, Majid S, Deole R, Brettin TS, Bruce D, Delano SF, Detter JC, Gleasner CD, Han CS, Misra M, Reitenga KG, Mikhailova N, Woyke T, Pitluck S, Nolan M, Land ML, Saunders E, Tapia R, Lapidus A, Ivanova N, Hoff WD.

Stand Genomic Sci. 2013 Apr 15;8(2):206-14. doi: 10.4056/sigs.3677284. eCollection 2013.

13.

A multiple-alignment based primer design algorithm for genetically highly variable DNA targets.

Brodin J, Krishnamoorthy M, Athreya G, Fischer W, Hraber P, Gleasner C, Green L, Korber B, Leitner T.

BMC Bioinformatics. 2013 Aug 21;14:255. doi: 10.1186/1471-2105-14-255.

14.

Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome.

Fitzsimons MS, Novotny M, Lo CC, Dichosa AE, Yee-Greenbaum JL, Snook JP, Gu W, Chertkov O, Davenport KW, McMurry K, Reitenga KG, Daughton AR, He J, Johnson SL, Gleasner CD, Wills PL, Parson-Quintana B, Chain PS, Detter JC, Lasken RS, Han CS.

Genome Res. 2013 May;23(5):878-88. doi: 10.1101/gr.142208.112. Epub 2013 Mar 14.

15.

Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2.

Ahmed SA, Awosika J, Baldwin C, Bishop-Lilly KA, Biswas B, Broomall S, Chain PS, Chertkov O, Chokoshvili O, Coyne S, Davenport K, Detter JC, Dorman W, Erkkila TH, Folster JP, Frey KG, George M, Gleasner C, Henry M, Hill KK, Hubbard K, Insalaco J, Johnson S, Kitzmiller A, Krepps M, Lo CC, Luu T, McNew LA, Minogue T, Munk CA, Osborne B, Patel M, Reitenga KG, Rosenzweig CN, Shea A, Shen X, Strockbine N, Tarr C, Teshima H, van Gieson E, Verratti K, Wolcott M, Xie G, Sozhamannan S, Gibbons HS; Threat Characterization Consortium..

PLoS One. 2012;7(11):e48228. doi: 10.1371/journal.pone.0048228. Epub 2012 Nov 1.

16.

Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia.

Martinez-Garcia M, Brazel DM, Swan BK, Arnosti C, Chain PS, Reitenga KG, Xie G, Poulton NJ, Lluesma Gomez M, Masland DE, Thompson B, Bellows WK, Ziervogel K, Lo CC, Ahmed S, Gleasner CD, Detter CJ, Stepanauskas R.

PLoS One. 2012;7(4):e35314. doi: 10.1371/journal.pone.0035314. Epub 2012 Apr 20.

17.

Genomics for key players in the N cycle from guinea pigs to the next frontier.

Chain PS, Xie G, Starkenburg SR, Scholz MB, Beckloff N, Lo CC, Davenport KW, Reitenga KG, Daligault HE, Detter JC, Freitas TA, Gleasner CD, Green LD, Han CS, McMurry KK, Meincke LJ, Shen X, Zeytun A.

Methods Enzymol. 2011;496:289-318. doi: 10.1016/B978-0-12-386489-5.00012-9. Review.

PMID:
21514469
18.

Epitope-specific CD8+ T lymphocytes cross-recognize mutant simian immunodeficiency virus (SIV) sequences but fail to contain very early evolution and eventual fixation of epitope escape mutations during SIV infection.

Cale EM, Hraber P, Giorgi EE, Fischer W, Bhattacharya T, Leitner T, Yeh WW, Gleasner C, Green LD, Han CS, Korber B, Letvin NL.

J Virol. 2011 Apr;85(8):3746-57. doi: 10.1128/JVI.02420-10. Epub 2011 Feb 9.

19.

Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing.

Fischer W, Ganusov VV, Giorgi EE, Hraber PT, Keele BF, Leitner T, Han CS, Gleasner CD, Green L, Lo CC, Nag A, Wallstrom TC, Wang S, McMichael AJ, Haynes BF, Hahn BH, Perelson AS, Borrow P, Shaw GM, Bhattacharya T, Korber BT.

PLoS One. 2010 Aug 20;5(8):e12303. doi: 10.1371/journal.pone.0012303.

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