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Items: 19


Microbiota-derived Metabolic Factors Reduce Campylobacteriosis in Mice.

Sun X, Winglee K, Gharaibeh RZ, Gauthier J, He Z, Tripathi P, Avram D, Bruner S, Fodor A, Jobin C.

Gastroenterology. 2018 Jan 31. pii: S0016-5085(18)30110-0. doi: 10.1053/j.gastro.2018.01.042. [Epub ahead of print]


Environmental factors regulate Paneth cell phenotype and host susceptibility to intestinal inflammation in Irgm1-deficient mice.

Rogala AR, Schoenborn AA, Fee BE, Cantillana VA, Joyce MJ, Gharaibeh RZ, Roy S, Fodor AA, Sartor RB, Taylor GA, Gulati AS.

Dis Model Mech. 2017 Dec 22. pii: dmm.031070. doi: 10.1242/dmm.031070. [Epub ahead of print]


Recent urbanization in China is correlated with a Westernized microbiome encoding increased virulence and antibiotic resistance genes.

Winglee K, Howard AG, Sha W, Gharaibeh RZ, Liu J, Jin D, Fodor AA, Gordon-Larsen P.

Microbiome. 2017 Sep 15;5(1):121. doi: 10.1186/s40168-017-0338-7.


An Atlas of β-Glucuronidases in the Human Intestinal Microbiome.

Pollet RM, D'Agostino EH, Walton WG, Xu Y, Little MS, Biernat KA, Pellock SJ, Patterson LM, Creekmore BC, Isenberg HN, Bahethi RR, Bhatt AP, Liu J, Gharaibeh RZ, Redinbo MR.

Structure. 2017 Jul 5;25(7):967-977.e5. doi: 10.1016/j.str.2017.05.003. Epub 2017 Jun 1.


Gut Microbial Dysbiosis Due to Helicobacter Drives an Increase in Marginal Zone B Cells in the Absence of IL-10 Signaling in Macrophages.

Ray A, Basu S, Gharaibeh RZ, Cook LC, Kumar R, Lefkowitz EJ, Walker CR, Morrow CD, Franklin CL, Geiger TL, Salzman NH, Fodor A, Dittel BN.

J Immunol. 2015 Oct 1;195(7):3071-85. doi: 10.4049/jimmunol.1500153. Epub 2015 Aug 31.


Analysis of changes in diversity and abundance of the microbial community in a cystic fibrosis patient over a multiyear period.

Stokell JR, Gharaibeh RZ, Hamp TJ, Zapata MJ, Fodor AA, Steck TR.

J Clin Microbiol. 2015 Jan;53(1):237-47. doi: 10.1128/JCM.02555-14. Epub 2014 Nov 12.


Microbial genomic analysis reveals the essential role of inflammation in bacteria-induced colorectal cancer.

Arthur JC, Gharaibeh RZ, Mühlbauer M, Perez-Chanona E, Uronis JM, McCafferty J, Fodor AA, Jobin C.

Nat Commun. 2014 Sep 3;5:4724. doi: 10.1038/ncomms5724.


Comparison of culture and molecular techniques for microbial community characterization in infected necrotizing pancreatitis.

Hanna EM, Hamp TJ, McKillop IH, Bahrani-Mougeot F, Martinie JB, Horton JM, Sindram D, Gharaibeh RZ, Fodor AA, Iannitti DA.

J Surg Res. 2014 Oct;191(2):362-9. doi: 10.1016/j.jss.2014.05.003. Epub 2014 May 9.


Reply to KN Litwak and S Levin.

Kavanagh K, Wylie AT, Tucker KL, Hamp TJ, Gharaibeh RZ, Fodor AA, Cullen JM.

Am J Clin Nutr. 2014 Jan;99(1):210. doi: 10.3945/ajcn.113.074633. No abstract available.


Reply to JS White.

Kavanagh K, Wylie AT, Tucker KL, Hamp TJ, Gharaibeh RZ, Fodor AA, Cullen JM.

Am J Clin Nutr. 2013 Nov;98(5):1370. doi: 10.3945/ajcn.113.072264. No abstract available.


VSL#3 probiotic modifies mucosal microbial composition but does not reduce colitis-associated colorectal cancer.

Arthur JC, Gharaibeh RZ, Uronis JM, Perez-Chanona E, Sha W, Tomkovich S, Mühlbauer M, Fodor AA, Jobin C.

Sci Rep. 2013 Oct 8;3:2868. doi: 10.1038/srep02868.


Stochastic changes over time and not founder effects drive cage effects in microbial community assembly in a mouse model.

McCafferty J, Mühlbauer M, Gharaibeh RZ, Arthur JC, Perez-Chanona E, Sha W, Jobin C, Fodor AA.

ISME J. 2013 Nov;7(11):2116-25. doi: 10.1038/ismej.2013.106. Epub 2013 Jul 4.


Dietary fructose induces endotoxemia and hepatic injury in calorically controlled primates.

Kavanagh K, Wylie AT, Tucker KL, Hamp TJ, Gharaibeh RZ, Fodor AA, Cullen JM.

Am J Clin Nutr. 2013 Aug;98(2):349-57. doi: 10.3945/ajcn.112.057331.


Rapid emergence of a ceftazidime-resistant Burkholderia multivorans strain in a cystic fibrosis patient.

Stokell JR, Gharaibeh RZ, Steck TR.

J Cyst Fibros. 2013 Dec;12(6):812-6. doi: 10.1016/j.jcf.2013.01.009. Epub 2013 Mar 9.


The illusion of specific capture: surface and solution studies of suboptimal oligonucleotide hybridization.

Garhyan J, Gharaibeh RZ, McGee S, Gibas CJ.

BMC Res Notes. 2013 Feb 27;6:72. doi: 10.1186/1756-0500-6-72.


Accurate estimates of microarray target concentration from a simple sequence-independent Langmuir model.

Gharaibeh RZ, Fodor AA, Gibas CJ.

PLoS One. 2010 Dec 30;5(12):e14464. doi: 10.1371/journal.pone.0014464.


Application of equilibrium models of solution hybridization to microarray design and analysis.

Gharaibeh RZ, Newton JM, Weller JW, Gibas CJ.

PLoS One. 2010 Jun 10;5(6):e11048. doi: 10.1371/journal.pone.0011048.


Background correction using dinucleotide affinities improves the performance of GCRMA.

Gharaibeh RZ, Fodor AA, Gibas CJ.

BMC Bioinformatics. 2008 Oct 23;9:452. doi: 10.1186/1471-2105-9-452.


Software note: using probe secondary structure information to enhance Affymetrix GeneChip background estimates.

Gharaibeh RZ, Fodor AA, Gibas CJ.

Comput Biol Chem. 2007 Apr;31(2):92-8. Epub 2007 Feb 20.

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