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Items: 18

1.

Predicted protein interactions of IFITMs may shed light on mechanisms of Zika virus-induced microcephaly and host invasion.

Ganapathiraju MK, Karunakaran KB, Correa-Menéndez J.

Version 2. F1000Res. 2016 Aug 5 [revised 2017 Jan 1];5:1919. doi: 10.12688/f1000research.9364.2. eCollection 2016.

2.

Generating testable hypotheses for schizophrenia and rheumatoid arthritis pathogenesis by integrating epidemiological, genomic, and protein interaction data.

Malavia TA, Chaparala S, Wood J, Chowdari K, Prasad KM, McClain L, Jegga AG, Ganapathiraju MK, Nimgaonkar VL.

NPJ Schizophr. 2017 Feb 24;3:11. doi: 10.1038/s41537-017-0010-z. eCollection 2017.

3.

The complex genetics of hypoplastic left heart syndrome.

Liu X, Yagi H, Saeed S, Bais AS, Gabriel GC, Chen Z, Peterson KA, Li Y, Schwartz MC, Reynolds WT, Saydmohammed M, Gibbs B, Wu Y, Devine W, Chatterjee B, Klena NT, Kostka D, de Mesy Bentley KL, Ganapathiraju MK, Dexheimer P, Leatherbury L, Khalifa O, Bhagat A, Zahid M, Pu W, Watkins S, Grossfeld P, Murray SA, Porter GA Jr, Tsang M, Martin LJ, Benson DW, Aronow BJ, Lo CW.

Nat Genet. 2017 Jul;49(7):1152-1159. doi: 10.1038/ng.3870. Epub 2017 May 22.

4.

A pilot study on the prevalence of DNA palindromes in breast cancer genomes.

Subramanian S, Chaparala S, Avali V, Ganapathiraju MK.

BMC Med Genomics. 2016 Dec 5;9(Suppl 3):73. doi: 10.1186/s12920-016-0232-3.

5.

Is the average shortest path length of gene set a reflection of their biological relatedness?

Embar V, Handen A, Ganapathiraju MK.

J Bioinform Comput Biol. 2016 Dec;14(6):1660002. doi: 10.1142/S0219720016600027.

6.

Schizophrenia interactome with 504 novel protein-protein interactions.

Ganapathiraju MK, Thahir M, Handen A, Sarkar SN, Sweet RA, Nimgaonkar VL, Loscher CE, Bauer EM, Chaparala S.

NPJ Schizophr. 2016 Apr 27;2:16012. doi: 10.1038/npjschz.2016.12. eCollection 2016.

7.

LENS: web-based lens for enrichment and network studies of human proteins.

Handen A, Ganapathiraju MK.

BMC Med Genomics. 2015;8 Suppl 4:S2. doi: 10.1186/1755-8794-8-S4-S2. Epub 2015 Dec 9.

8.

Towards extracting supporting information about predicted protein-protein interactions.

Roth A, Subramanian S, Ganapathiraju MK.

IEEE/ACM Trans Comput Biol Bioinform. 2015 Dec 7. [Epub ahead of print]

PMID:
26672046
9.

Global genetic analysis in mice unveils central role for cilia in congenital heart disease.

Li Y, Klena NT, Gabriel GC, Liu X, Kim AJ, Lemke K, Chen Y, Chatterjee B, Devine W, Damerla RR, Chang C, Yagi H, San Agustin JT, Thahir M, Anderton S, Lawhead C, Vescovi A, Pratt H, Morgan J, Haynes L, Smith CL, Eppig JT, Reinholdt L, Francis R, Leatherbury L, Ganapathiraju MK, Tobita K, Pazour GJ, Lo CW.

Nature. 2015 May 28;521(7553):520-4. doi: 10.1038/nature14269. Epub 2015 Mar 25.

10.

Antiviral activity of human OASL protein is mediated by enhancing signaling of the RIG-I RNA sensor.

Zhu J, Zhang Y, Ghosh A, Cuevas RA, Forero A, Dhar J, Ibsen MS, Schmid-Burgk JL, Schmidt T, Ganapathiraju MK, Fujita T, Hartmann R, Barik S, Hornung V, Coyne CB, Sarkar SN.

Immunity. 2014 Jun 19;40(6):936-48. doi: 10.1016/j.immuni.2014.05.007. Epub 2014 Jun 12.

11.

Predicting gene ontology annotations of orphan GWAS genes using protein-protein interactions.

Kuppuswamy U, Ananthasubramanian S, Wang Y, Balakrishnan N, Ganapathiraju MK.

Algorithms Mol Biol. 2014 Apr 3;9(1):10. doi: 10.1186/1748-7188-9-10.

12.
13.

Wiki-pi: a web-server of annotated human protein-protein interactions to aid in discovery of protein function.

Orii N, Ganapathiraju MK.

PLoS One. 2012;7(11):e49029. doi: 10.1371/journal.pone.0049029. Epub 2012 Nov 28.

14.

An efficient heuristic method for active feature acquisition and its application to protein-protein interaction prediction.

Thahir M, Sharma T, Ganapathiraju MK.

BMC Proc. 2012 Nov 13;6 Suppl 7:S2. doi: 10.1186/1753-6561-6-S7-S2. Epub 2012 Nov 13.

15.

Suite of tools for statistical N-gram language modeling for pattern mining in whole genome sequences.

Ganapathiraju MK, Mitchell AD, Thahir M, Motwani K, Ananthasubramanian S.

J Bioinform Comput Biol. 2012 Dec;10(6):1250016. doi: 10.1142/S0219720012500163. Epub 2012 Jul 22.

PMID:
22817111
16.

N-gram analysis of 970 microbial organisms reveals presence of biological language models.

Osmanbeyoglu HU, Ganapathiraju MK.

BMC Bioinformatics. 2011 Jan 10;12:12. doi: 10.1186/1471-2105-12-12.

17.

Active machine learning for transmembrane helix prediction.

Osmanbeyoglu HU, Wehner JA, Carbonell JG, Ganapathiraju MK.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S58. doi: 10.1186/1471-2105-11-S1-S58.

18.

Active learning for human protein-protein interaction prediction.

Mohamed TP, Carbonell JG, Ganapathiraju MK.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S57. doi: 10.1186/1471-2105-11-S1-S57.

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