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Items: 1 to 20 of 165

1.

Genome-wide association study and genomic prediction in citrus: Potential of genomics-assisted breeding for fruit quality traits.

Minamikawa MF, Nonaka K, Kaminuma E, Kajiya-Kanegae H, Onogi A, Goto S, Yoshioka T, Imai A, Hamada H, Hayashi T, Matsumoto S, Katayose Y, Toyoda A, Fujiyama A, Nakamura Y, Shimizu T, Iwata H.

Sci Rep. 2017 Jul 5;7(1):4721. doi: 10.1038/s41598-017-05100-x.

2.

DNApod: DNA polymorphism annotation database from next-generation sequence read archives.

Mochizuki T, Tanizawa Y, Fujisawa T, Ohta T, Nikoh N, Shimizu T, Toyoda A, Fujiyama A, Kurata N, Nagasaki H, Kaminuma E, Nakamura Y.

PLoS One. 2017 Feb 24;12(2):e0172269. doi: 10.1371/journal.pone.0172269. eCollection 2017.

3.

Gene-body chromatin modification dynamics mediate epigenome differentiation in Arabidopsis.

Inagaki S, Takahashi M, Hosaka A, Ito T, Toyoda A, Fujiyama A, Tarutani Y, Kakutani T.

EMBO J. 2017 Apr 13;36(8):970-980. doi: 10.15252/embj.201694983. Epub 2017 Jan 18.

PMID:
28100676
4.

Identification of functional enolase genes of the silkworm Bombyx mori from public databases with a combination of dry and wet bench processes.

Kikuchi A, Nakazato T, Ito K, Nojima Y, Yokoyama T, Iwabuchi K, Bono H, Toyoda A, Fujiyama A, Sato R, Tabunoki H.

BMC Genomics. 2017 Jan 13;18(1):83. doi: 10.1186/s12864-016-3455-y.

5.

Different contributions of local- and distant-regulatory changes to transcriptome divergence between stickleback ecotypes.

Ishikawa A, Kusakabe M, Yoshida K, Ravinet M, Makino T, Toyoda A, Fujiyama A, Kitano J.

Evolution. 2017 Mar;71(3):565-581. doi: 10.1111/evo.13175. Epub 2017 Feb 2.

PMID:
28075479
6.

Constitutive centromere-associated network controls centromere drift in vertebrate cells.

Hori T, Kagawa N, Toyoda A, Fujiyama A, Misu S, Monma N, Makino F, Ikeo K, Fukagawa T.

J Cell Biol. 2017 Jan 2;216(1):101-113. doi: 10.1083/jcb.201605001. Epub 2016 Dec 9.

7.

Hybrid Origins of Citrus Varieties Inferred from DNA Marker Analysis of Nuclear and Organelle Genomes.

Shimizu T, Kitajima A, Nonaka K, Yoshioka T, Ohta S, Goto S, Toyoda A, Fujiyama A, Mochizuki T, Nagasaki H, Kaminuma E, Nakamura Y.

PLoS One. 2016 Nov 30;11(11):e0166969. doi: 10.1371/journal.pone.0166969. eCollection 2016.

8.

Genome sequence and analysis of the Japanese morning glory Ipomoea nil.

Hoshino A, Jayakumar V, Nitasaka E, Toyoda A, Noguchi H, Itoh T, Shin-I T, Minakuchi Y, Koda Y, Nagano AJ, Yasugi M, Honjo MN, Kudoh H, Seki M, Kamiya A, Shiraki T, Carninci P, Asamizu E, Nishide H, Tanaka S, Park KI, Morita Y, Yokoyama K, Uchiyama I, Tanaka Y, Tabata S, Shinozaki K, Hayashizaki Y, Kohara Y, Suzuki Y, Sugano S, Fujiyama A, Iida S, Sakakibara Y.

Nat Commun. 2016 Nov 8;7:13295. doi: 10.1038/ncomms13295.

9.

Acetylation of histone H4 lysine 5 and 12 is required for CENP-A deposition into centromeres.

Shang WH, Hori T, Westhorpe FG, Godek KM, Toyoda A, Misu S, Monma N, Ikeo K, Carroll CW, Takami Y, Fujiyama A, Kimura H, Straight AF, Fukagawa T.

Nat Commun. 2016 Nov 4;7:13465. doi: 10.1038/ncomms13465.

10.

Genetic basis for variation in salinity tolerance between stickleback ecotypes.

Kusakabe M, Ishikawa A, Ravinet M, Yoshida K, Makino T, Toyoda A, Fujiyama A, Kitano J.

Mol Ecol. 2017 Jan;26(1):304-319. doi: 10.1111/mec.13875. Epub 2016 Oct 27.

PMID:
27706866
11.

Genome evolution in the allotetraploid frog Xenopus laevis.

Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, Hellsten U, Lyons JB, Simakov O, Putnam N, Stites J, Kuroki Y, Tanaka T, Michiue T, Watanabe M, Bogdanovic O, Lister R, Georgiou G, Paranjpe SS, van Kruijsbergen I, Shu S, Carlson J, Kinoshita T, Ohta Y, Mawaribuchi S, Jenkins J, Grimwood J, Schmutz J, Mitros T, Mozaffari SV, Suzuki Y, Haramoto Y, Yamamoto TS, Takagi C, Heald R, Miller K, Haudenschild C, Kitzman J, Nakayama T, Izutsu Y, Robert J, Fortriede J, Burns K, Lotay V, Karimi K, Yasuoka Y, Dichmann DS, Flajnik MF, Houston DW, Shendure J, DuPasquier L, Vize PD, Zorn AM, Ito M, Marcotte EM, Wallingford JB, Ito Y, Asashima M, Ueno N, Matsuda Y, Veenstra GJ, Fujiyama A, Harland RM, Taira M, Rokhsar DS.

Nature. 2016 Oct 20;538(7625):336-343. doi: 10.1038/nature19840.

12.

Single-neuron and genetic correlates of autistic behavior in macaque.

Yoshida K, Go Y, Kushima I, Toyoda A, Fujiyama A, Imai H, Saito N, Iriki A, Ozaki N, Isoda M.

Sci Adv. 2016 Sep 21;2(9):e1600558. eCollection 2016 Sep.

13.

Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein.

Hashimoto T, Horikawa DD, Saito Y, Kuwahara H, Kozuka-Hata H, Shin-I T, Minakuchi Y, Ohishi K, Motoyama A, Aizu T, Enomoto A, Kondo K, Tanaka S, Hara Y, Koshikawa S, Sagara H, Miura T, Yokobori S, Miyagawa K, Suzuki Y, Kubo T, Oyama M, Kohara Y, Fujiyama A, Arakawa K, Katayama T, Toyoda A, Kunieda T.

Nat Commun. 2016 Sep 20;7:12808. doi: 10.1038/ncomms12808.

14.

Complete Genome Sequence of Aurantimicrobium minutum Type Strain KNCT, a Planktonic Ultramicrobacterium Isolated from River Water.

Nakai R, Fujisawa T, Nakamura Y, Nishide H, Uchiyama I, Baba T, Toyoda A, Fujiyama A, Naganuma T, Niki H.

Genome Announc. 2016 Jun 30;4(3). pii: e00616-16. doi: 10.1128/genomeA.00616-16.

15.

The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity.

Hanschen ER, Marriage TN, Ferris PJ, Hamaji T, Toyoda A, Fujiyama A, Neme R, Noguchi H, Minakuchi Y, Suzuki M, Kawai-Toyooka H, Smith DR, Sparks H, Anderson J, Bakarić R, Luria V, Karger A, Kirschner MW, Durand PM, Michod RE, Nozaki H, Olson BJ.

Nat Commun. 2016 Apr 22;7:11370. doi: 10.1038/ncomms11370.

16.

Whole-genome sequencing reveals small genomic regions of introgression in an introduced crater lake population of threespine stickleback.

Yoshida K, Miyagi R, Mori S, Takahashi A, Makino T, Toyoda A, Fujiyama A, Kitano J.

Ecol Evol. 2016 Mar 2;6(7):2190-204. doi: 10.1002/ece3.2047. eCollection 2016 Apr.

17.

Sequence of the Gonium pectorale Mating Locus Reveals a Complex and Dynamic History of Changes in Volvocine Algal Mating Haplotypes.

Hamaji T, Mogi Y, Ferris PJ, Mori T, Miyagishima S, Kabeya Y, Nishimura Y, Toyoda A, Noguchi H, Fujiyama A, Olson BJ, Marriage TN, Nishii I, Umen JG, Nozaki H.

G3 (Bethesda). 2016 May 3;6(5):1179-89. doi: 10.1534/g3.115.026229.

18.

α-Helix-peptides comprising the human nuclear receptor ERRγ competitively provoke inhibition of functional homomeric dimerization.

Liu X, Nishimura H, Fujiyama A, Matsushima A, Shimohigashi M, Shimohigashi Y.

Biopolymers. 2016 Nov 4;106(4):547-54. doi: 10.1002/bip.22795.

PMID:
26662629
19.

Dynamics of Dark-Fly Genome Under Environmental Selections.

Izutsu M, Toyoda A, Fujiyama A, Agata K, Fuse N.

G3 (Bethesda). 2015 Dec 4;6(2):365-76. doi: 10.1534/g3.115.023549.

20.

Resequencing of the common marmoset genome improves genome assemblies and gene-coding sequence analysis.

Sato K, Kuroki Y, Kumita W, Fujiyama A, Toyoda A, Kawai J, Iriki A, Sasaki E, Okano H, Sakakibara Y.

Sci Rep. 2015 Nov 20;5:16894. doi: 10.1038/srep16894.

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