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Items: 14

1.

Bias in ligation-based small RNA sequencing library construction is determined by adaptor and RNA structure.

Fuchs RT, Sun Z, Zhuang F, Robb GB.

PLoS One. 2015 May 5;10(5):e0126049. doi: 10.1371/journal.pone.0126049. eCollection 2015.

2.

RNAi triggered by specialized machinery silences developmental genes and retrotransposons.

Yamanaka S, Mehta S, Reyes-Turcu FE, Zhuang F, Fuchs RT, Rong Y, Robb GB, Grewal SI.

Nature. 2013 Jan 24;493(7433):557-60. doi: 10.1038/nature11716. Epub 2012 Nov 14.

3.

Small RNA expression profiling by high-throughput sequencing: implications of enzymatic manipulation.

Zhuang F, Fuchs RT, Robb GB.

J Nucleic Acids. 2012;2012:360358. doi: 10.1155/2012/360358. Epub 2012 Jun 20.

4.

Structural bias in T4 RNA ligase-mediated 3'-adapter ligation.

Zhuang F, Fuchs RT, Sun Z, Zheng Y, Robb GB.

Nucleic Acids Res. 2012 Apr;40(7):e54. doi: 10.1093/nar/gkr1263. Epub 2012 Jan 12.

5.

Membrane localization of small proteins in Escherichia coli.

Fontaine F, Fuchs RT, Storz G.

J Biol Chem. 2011 Sep 16;286(37):32464-74. doi: 10.1074/jbc.M111.245696. Epub 2011 Jul 21.

6.

T4 RNA ligase 2 truncated active site mutants: improved tools for RNA analysis.

Viollet S, Fuchs RT, Munafo DB, Zhuang F, Robb GB.

BMC Biotechnol. 2011 Jul 1;11:72. doi: 10.1186/1472-6750-11-72.

7.

The SAM-responsive S(MK) box is a reversible riboswitch.

Smith AM, Fuchs RT, Grundy FJ, Henkin TM.

Mol Microbiol. 2010 Dec;78(6):1393-402. doi: 10.1111/j.1365-2958.2010.07410.x. Epub 2010 Oct 18.

8.

Tuning riboswitch regulation through conformational selection.

Wilson RC, Smith AM, Fuchs RT, Kleckner IR, Henkin TM, Foster MP.

J Mol Biol. 2011 Jan 28;405(4):926-38. doi: 10.1016/j.jmb.2010.10.056. Epub 2010 Nov 12.

9.

Riboswitch RNAs: regulation of gene expression by direct monitoring of a physiological signal.

Smith AM, Fuchs RT, Grundy FJ, Henkin TM.

RNA Biol. 2010 Jan-Feb;7(1):104-10. Epub 2010 Jan 25. Review.

10.

Crystal structures of the SAM-III/S(MK) riboswitch reveal the SAM-dependent translation inhibition mechanism.

Lu C, Smith AM, Fuchs RT, Ding F, Rajashankar K, Henkin TM, Ke A.

Nat Struct Mol Biol. 2008 Oct;15(10):1076-83. doi: 10.1038/nsmb.1494. Epub 2008 Sep 21.

11.

S-adenosylmethionine directly inhibits binding of 30S ribosomal subunits to the SMK box translational riboswitch RNA.

Fuchs RT, Grundy FJ, Henkin TM.

Proc Natl Acad Sci U S A. 2007 Mar 20;104(12):4876-80. Epub 2007 Mar 9.

12.

The S(MK) box is a new SAM-binding RNA for translational regulation of SAM synthetase.

Fuchs RT, Grundy FJ, Henkin TM.

Nat Struct Mol Biol. 2006 Mar;13(3):226-33. Epub 2006 Feb 19.

PMID:
16491091
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