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Items: 1 to 20 of 138

1.

Porcine familial adenomatous polyposis model enables systematic analysis of early events in adenoma progression.

Flisikowska T, Stachowiak M, Xu H, Wagner A, Hernandez-Caceres A, Wurmser C, Perleberg C, Pausch H, Perkowska A, Fischer K, Frishman D, Fries R, Switonski M, Kind A, Saur D, Schnieke A, Flisikowski K.

Sci Rep. 2017 Jul 26;7(1):6613. doi: 10.1038/s41598-017-06741-8.

2.

Maternal placenta modulates a deleterious fetal mutation.

Xu H, Pausch H, Venhoranta H, Rutkowska K, Wurmser C, Rieblinger B, Flisikowska T, Frishman D, Zwierzchowski L, Fries R, Andersson M, Kind A, Schnieke A, Flisikowski K.

Biol Reprod. 2017 Jun 29. doi: 10.1093/biolre/iox064. [Epub ahead of print]

PMID:
28679164
3.

Annotation of the Domestic Pig Genome by Quantitative Proteogenomics.

Marx H, Hahne H, Ulbrich SE, Schnieke A, Rottmann O, Frishman D, Kuster B.

J Proteome Res. 2017 Aug 4;16(8):2887-2898. doi: 10.1021/acs.jproteome.7b00184. Epub 2017 Jun 29.

PMID:
28625053
4.

Genome-wide analysis of somatic copy number alterations and chromosomal breakages in osteosarcoma.

Smida J, Xu H, Zhang Y, Baumhoer D, Ribi S, Kovac M, von Luettichau I, Bielack S, O'Leary VB, Leib-Mösch C, Frishman D, Nathrath M.

Int J Cancer. 2017 Aug 15;141(4):816-828. doi: 10.1002/ijc.30778. Epub 2017 May 25.

PMID:
28494505
5.

Melting temperature highlights functionally important RNA structure and sequence elements in yeast mRNA coding regions.

Qi F, Frishman D.

Nucleic Acids Res. 2017 Jun 2;45(10):6109-6118. doi: 10.1093/nar/gkx161.

6.

Genetic Spectrum of Idiopathic Restrictive Cardiomyopathy Uncovered by Next-Generation Sequencing.

Kostareva A, Kiselev A, Gudkova A, Frishman G, Ruepp A, Frishman D, Smolina N, Tarnovskaya S, Nilsson D, Zlotina A, Khodyuchenko T, Vershinina T, Pervunina T, Klyushina A, Kozlenok A, Sjoberg G, Golovljova I, Sejersen T, Shlyakhto E.

PLoS One. 2016 Sep 23;11(9):e0163362. doi: 10.1371/journal.pone.0163362. eCollection 2016.

7.

Assessment of cancer and virus antigens for cross-reactivity in human tissues.

Jaravine V, Raffegerst S, Schendel DJ, Frishman D.

Bioinformatics. 2017 Jan 1;33(1):104-111. doi: 10.1093/bioinformatics/btw567. Epub 2016 Sep 10.

PMID:
27614350
8.

Sequence- and Structure-Based Analysis of Tissue-Specific Phosphorylation Sites.

Karabulut NP, Frishman D.

PLoS One. 2016 Jun 22;11(6):e0157896. doi: 10.1371/journal.pone.0157896. eCollection 2016.

9.

Accurate prediction of helix interactions and residue contacts in membrane proteins.

Hönigschmid P, Frishman D.

J Struct Biol. 2016 Apr;194(1):112-23. doi: 10.1016/j.jsb.2016.02.005. Epub 2016 Feb 3.

PMID:
26851352
10.

Genomic determinants of somatic copy number alterations across human cancers.

Zhang Y, Xu H, Frishman D.

Hum Mol Genet. 2016 Mar 1;25(5):1019-30. doi: 10.1093/hmg/ddv623. Epub 2016 Jan 4.

PMID:
26732428
11.

A census of α-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea.

Kristensen DM, Saeed U, Frishman D, Koonin EV.

BMC Bioinformatics. 2015 Nov 10;16:380. doi: 10.1186/s12859-015-0817-4.

12.

Differential expression analysis of human endogenous retroviruses based on ENCODE RNA-seq data.

Haase K, Mösch A, Frishman D.

BMC Med Genomics. 2015 Nov 3;8:71. doi: 10.1186/s12920-015-0146-5.

13.

Identification of novel hereditary cancer genes by whole exome sequencing.

Sokolenko AP, Suspitsin EN, Kuligina ESh, Bizin IV, Frishman D, Imyanitov EN.

Cancer Lett. 2015 Dec 28;369(2):274-88. doi: 10.1016/j.canlet.2015.09.014. Epub 2015 Sep 30. Review.

PMID:
26427841
14.

Tissue-specific sequence and structural environments of lysine acetylation sites.

Karabulut NP, Frishman D.

J Struct Biol. 2015 Jul;191(1):39-48. doi: 10.1016/j.jsb.2015.06.001. Epub 2015 Jun 3.

PMID:
26049078
15.

Inter-chromosomal contact networks provide insights into Mammalian chromatin organization.

Kaufmann S, Fuchs C, Gonik M, Khrameeva EE, Mironov AA, Frishman D.

PLoS One. 2015 May 11;10(5):e0126125. doi: 10.1371/journal.pone.0126125. eCollection 2015.

16.

Expitope: a web server for epitope expression.

Haase K, Raffegerst S, Schendel DJ, Frishman D.

Bioinformatics. 2015 Jun 1;31(11):1854-6. doi: 10.1093/bioinformatics/btv068. Epub 2015 Feb 1.

PMID:
25644270
17.

Analysis of micro-rearrangements in 25 eukaryotic species pairs by SyntenyMapper.

Kaufmann S, Frishman D.

PLoS One. 2014 Nov 6;9(11):e112341. doi: 10.1371/journal.pone.0112341. eCollection 2014.

18.

Genetic variability within the Polish tomato torrado virus Kra isolate caused by deletions in the 3'-untranslated region of genomic RNA1.

Budziszewska M, Wieczorek P, Zhang Y, Frishman D, Obrępalska-Stęplowska A.

Virus Res. 2014 Jun 24;185:47-52. doi: 10.1016/j.virusres.2014.03.008. Epub 2014 Mar 19.

PMID:
24657785
19.

Challenges in RNA virus bioinformatics.

Marz M, Beerenwinkel N, Drosten C, Fricke M, Frishman D, Hofacker IL, Hoffmann D, Middendorf M, Rattei T, Stadler PF, Töpfer A.

Bioinformatics. 2014 Jul 1;30(13):1793-9. doi: 10.1093/bioinformatics/btu105. Epub 2014 Mar 3. Review.

PMID:
24590443
20.

Prediction of protein interaction types based on sequence and network features.

Goebels F, Frishman D.

BMC Syst Biol. 2013;7 Suppl 6:S5. doi: 10.1186/1752-0509-7-S6-S5. Epub 2013 Dec 13.

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