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Items: 1 to 20 of 156

1.

Picking up the Ball at the K/Pg Boundary: The Distribution of Ancient Polyploidies in the Plant Phylogenetic Tree as a Spandrel of Asexuality with Occasional Sex.

Freeling M.

Plant Cell. 2017 Feb;29(2):202-206. doi: 10.1105/tpc.16.00836. Epub 2017 Feb 17. No abstract available.

2.

Natural antisense transcripts are significantly involved in regulation of drought stress in maize.

Xu J, Wang Q, Freeling M, Zhang X, Xu Y, Mao Y, Tang X, Wu F, Lan H, Cao M, Rong T, Lisch D, Lu Y.

Nucleic Acids Res. 2017 May 19;45(9):5126-5141. doi: 10.1093/nar/gkx085.

PMID:
28175341
3.

Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea.

Cheng F, Sun R, Hou X, Zheng H, Zhang F, Zhang Y, Liu B, Liang J, Zhuang M, Liu Y, Liu D, Wang X, Li P, Liu Y, Lin K, Bucher J, Zhang N, Wang Y, Wang H, Deng J, Liao Y, Wei K, Zhang X, Fu L, Hu Y, Liu J, Cai C, Zhang S, Zhang S, Li F, Zhang H, Zhang J, Guo N, Liu Z, Liu J, Sun C, Ma Y, Zhang H, Cui Y, Freeling MR, Borm T, Bonnema G, Wu J, Wang X.

Nat Genet. 2016 Oct;48(10):1218-24. doi: 10.1038/ng.3634. Epub 2016 Aug 15.

PMID:
27526322
4.

Epigenetic regulation of subgenome dominance following whole genome triplication in Brassica rapa.

Cheng F, Sun C, Wu J, Schnable J, Woodhouse MR, Liang J, Cai C, Freeling M, Wang X.

New Phytol. 2016 Jul;211(1):288-99. doi: 10.1111/nph.13884. Epub 2016 Feb 12.

PMID:
26871271
5.

Fractionation and subfunctionalization following genome duplications: mechanisms that drive gene content and their consequences.

Freeling M, Scanlon MJ, Fowler JE.

Curr Opin Genet Dev. 2015 Dec;35:110-8. doi: 10.1016/j.gde.2015.11.002. Epub 2015 Dec 4. Review.

PMID:
26657818
6.

Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum.

VanBuren R, Bryant D, Edger PP, Tang H, Burgess D, Challabathula D, Spittle K, Hall R, Gu J, Lyons E, Freeling M, Bartels D, Ten Hallers B, Hastie A, Michael TP, Mockler TC.

Nature. 2015 Nov 26;527(7579):508-11. doi: 10.1038/nature15714. Epub 2015 Nov 11.

PMID:
26560029
7.

The pineapple genome and the evolution of CAM photosynthesis.

Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, Ye Z, Miao C, Lin Z, Wang H, Zhou H, Yim WC, Priest HD, Zheng C, Woodhouse M, Edger PP, Guyot R, Guo HB, Guo H, Zheng G, Singh R, Sharma A, Min X, Zheng Y, Lee H, Gurtowski J, Sedlazeck FJ, Harkess A, McKain MR, Liao Z, Fang J, Liu J, Zhang X, Zhang Q, Hu W, Qin Y, Wang K, Chen LY, Shirley N, Lin YR, Liu LY, Hernandez AG, Wright CL, Bulone V, Tuskan GA, Heath K, Zee F, Moore PH, Sunkar R, Leebens-Mack JH, Mockler T, Bennetzen JL, Freeling M, Sankoff D, Paterson AH, Zhu X, Yang X, Smith JA, Cushman JC, Paull RE, Yu Q.

Nat Genet. 2015 Dec;47(12):1435-42. doi: 10.1038/ng.3435. Epub 2015 Nov 2.

8.

Advances in understanding cis regulation of the plant gene with an emphasis on comparative genomics.

Burgess DG, Xu J, Freeling M.

Curr Opin Plant Biol. 2015 Oct;27:141-7. doi: 10.1016/j.pbi.2015.07.001. Epub 2015 Aug 3. Review.

PMID:
26247124
9.

A Solution to the C-Value Paradox and the Function of Junk DNA: The Genome Balance Hypothesis.

Freeling M, Xu J, Woodhouse M, Lisch D.

Mol Plant. 2015 Jun;8(6):899-910. doi: 10.1016/j.molp.2015.02.009. Epub 2015 Mar 3.

10.

Exploring experienced nurses' attitudes, views and expectations of new graduate nurses: a critical review.

Freeling M, Parker S.

Nurse Educ Today. 2015 Feb;35(2):e42-9. doi: 10.1016/j.nedt.2014.11.011. Epub 2014 Nov 28. Review.

PMID:
25499528
11.

Co-option of the polarity gene network shapes filament morphology in angiosperms.

de Almeida AM, Yockteng R, Schnable J, Alvarez-Buylla ER, Freeling M, Specht CD.

Sci Rep. 2014 Aug 29;4:6194. doi: 10.1038/srep06194.

12.

Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids.

Woodhouse MR, Cheng F, Pires JC, Lisch D, Freeling M, Wang X.

Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5283-8. doi: 10.1073/pnas.1402475111. Epub 2014 Mar 24. Erratum in: Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6527.

13.
14.

Two evolutionarily distinct classes of paleopolyploidy.

Garsmeur O, Schnable JC, Almeida A, Jourda C, D'Hont A, Freeling M.

Mol Biol Evol. 2014 Feb;31(2):448-54. doi: 10.1093/molbev/mst230. Epub 2013 Dec 1.

PMID:
24296661
15.

Unequal redundancy in maize knotted1 homeobox genes.

Bolduc N, Tyers RG, Freeling M, Hake S.

Plant Physiol. 2014 Jan;164(1):229-38. doi: 10.1104/pp.113.228791. Epub 2013 Nov 11.

16.

Automated conserved non-coding sequence (CNS) discovery reveals differences in gene content and promoter evolution among grasses.

Turco G, Schnable JC, Pedersen B, Freeling M.

Front Plant Sci. 2013 Jul 2;4:170. doi: 10.3389/fpls.2013.00170. eCollection 2013.

17.

The Brassica genome.

Wang X, Freeling M.

Front Plant Sci. 2013 May 30;4:148. doi: 10.3389/fpls.2013.00148. eCollection 2013. No abstract available.

18.

The fate of Arabidopsis thaliana homeologous CNSs and their motifs in the Paleohexaploid Brassica rapa.

Subramaniam S, Wang X, Freeling M, Pires JC.

Genome Biol Evol. 2013;5(4):646-60. doi: 10.1093/gbe/evt035.

19.

Conserved non-coding regulatory signatures in Arabidopsis co-expressed gene modules.

Spangler JB, Ficklin SP, Luo F, Freeling M, Feltus FA.

PLoS One. 2012;7(9):e45041. Epub 2012 Sep 14.

20.

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.

D'Hont A, Denoeud F, Aury JM, Baurens FC, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M, Da Silva C, Jabbari K, Cardi C, Poulain J, Souquet M, Labadie K, Jourda C, Lengellé J, Rodier-Goud M, Alberti A, Bernard M, Correa M, Ayyampalayam S, Mckain MR, Leebens-Mack J, Burgess D, Freeling M, Mbéguié-A-Mbéguié D, Chabannes M, Wicker T, Panaud O, Barbosa J, Hribova E, Heslop-Harrison P, Habas R, Rivallan R, Francois P, Poiron C, Kilian A, Burthia D, Jenny C, Bakry F, Brown S, Guignon V, Kema G, Dita M, Waalwijk C, Joseph S, Dievart A, Jaillon O, Leclercq J, Argout X, Lyons E, Almeida A, Jeridi M, Dolezel J, Roux N, Risterucci AM, Weissenbach J, Ruiz M, Glaszmann JC, Quétier F, Yahiaoui N, Wincker P.

Nature. 2012 Aug 9;488(7410):213-7. doi: 10.1038/nature11241.

PMID:
22801500

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