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Items: 1 to 20 of 48

1.

Measuring Signaling and RNA-Seq in the Same Cell Links Gene Expression to Dynamic Patterns of NF-κB Activation.

Lane K, Van Valen D, DeFelice MM, Macklin DN, Kudo T, Jaimovich A, Carr A, Meyer T, Pe'er D, Boutet SC, Covert MW.

Cell Syst. 2017 Apr 26;4(4):458-469.e5. doi: 10.1016/j.cels.2017.03.010. Epub 2017 Apr 5.

PMID:
28396000
2.

Corrigendum: Fluidic Logic Used in a Systems Approach to Enable Integrated Single-Cell Functional Analysis.

Ramalingam N, Fowler B, Szpankowski L, Leyrat AA, Hukari K, Maung MT, Yorza W, Norris M, Cesar C, Shuga J, Gonzales ML, Sanada CD, Wang X, Yeung R, Hwang W, Axsom J, Devaraju NS, Angeles ND, Greene C, Zhou MF, Ong ES, Poh CC, Lam M, Choi H, Htoo Z, Lee L, Chin CS, Shen ZW, Lu CT, Holcomb I, Ooi A, Stolarczyk C, Shuga T, Livak KJ, Larsen C, Unger M, West JA.

Front Bioeng Biotechnol. 2017 Mar 14;5:11. doi: 10.3389/fbioe.2017.00011. eCollection 2017.

3.

Transcriptional Networks in Single Perivascular Cells Sorted from Human Adipose Tissue Reveal a Hierarchy of Mesenchymal Stem Cells.

Hardy WR, Moldovan NI, Moldovan L, Livak KJ, Datta K, Goswami C, Corselli M, Traktuev DO, Murray IR, Péault B, March K.

Stem Cells. 2017 May;35(5):1273-1289. doi: 10.1002/stem.2599. Epub 2017 Mar 19.

PMID:
28233376
4.

Imaging Mass Cytometry.

Chang Q, Ornatsky OI, Siddiqui I, Loboda A, Baranov VI, Hedley DW.

Cytometry A. 2017 Feb;91(2):160-169. doi: 10.1002/cyto.a.23053. Epub 2017 Feb 3.

PMID:
28160444
5.

Single-Cell Transcriptomic Analysis Defines Heterogeneity and Transcriptional Dynamics in the Adult Neural Stem Cell Lineage.

Dulken BW, Leeman DS, Boutet SC, Hebestreit K, Brunet A.

Cell Rep. 2017 Jan 17;18(3):777-790. doi: 10.1016/j.celrep.2016.12.060.

6.

The nature and nurture of cell heterogeneity: accounting for macrophage gene-environment interactions with single-cell RNA-Seq.

Wills QF, Mellado-Gomez E, Nolan R, Warner D, Sharma E, Broxholme J, Wright B, Lockstone H, James W, Lynch M, Gonzales M, West J, Leyrat A, Padilla-Parra S, Filippi S, Holmes C, Moore MD, Bowden R.

BMC Genomics. 2017 Jan 7;18(1):53. doi: 10.1186/s12864-016-3445-0.

7.

Deformation-induced transitional myofibroblasts contribute to compensatory lung growth.

Bennett RD, Ysasi AB, Wagner WL, Valenzuela CD, Tsuda A, Pyne S, Li S, Grimsby J, Pokharel P, Livak KJ, Ackermann M, Blainey P, Mentzer SJ.

Am J Physiol Lung Cell Mol Physiol. 2017 Jan 1;312(1):L79-L88. doi: 10.1152/ajplung.00383.2016. Epub 2016 Nov 11.

PMID:
27836901
8.

Transcriptomic Characterization of SF3B1 Mutation Reveals Its Pleiotropic Effects in Chronic Lymphocytic Leukemia.

Wang L, Brooks AN, Fan J, Wan Y, Gambe R, Li S, Hergert S, Yin S, Freeman SS, Levin JZ, Fan L, Seiler M, Buonamici S, Smith PG, Chau KF, Cibulskis CL, Zhang W, Rassenti LZ, Ghia EM, Kipps TJ, Fernandes S, Bloch DB, Kotliar D, Landau DA, Shukla SA, Aster JC, Reed R, DeLuca DS, Brown JR, Neuberg D, Getz G, Livak KJ, Meyerson MM, Kharchenko PV, Wu CJ.

Cancer Cell. 2016 Nov 14;30(5):750-763. doi: 10.1016/j.ccell.2016.10.005. Epub 2016 Nov 3.

PMID:
27818134
9.

Biodistribution of cisplatin revealed by imaging mass cytometry identifies extensive collagen binding in tumor and normal tissues.

Chang Q, Ornatsky OI, Siddiqui I, Straus R, Baranov VI, Hedley DW.

Sci Rep. 2016 Nov 4;6:36641. doi: 10.1038/srep36641.

10.

Fluidic Logic Used in a Systems Approach to Enable Integrated Single-Cell Functional Analysis.

Ramalingam N, Fowler B, Szpankowski L, Leyrat AA, Hukari K, Maung MT, Yorza W, Norris M, Cesar C, Shuga J, Gonzales ML, Sanada CD, Wang X, Yeung R, Hwang W, Axsom J, Devaraju NS, Angeles ND, Greene C, Zhou MF, Ong ES, Poh CC, Lam M, Choi H, Htoo Z, Lee L, Chin CS, Shen ZW, Lu CT, Holcomb I, Ooi A, Stolarczyk C, Shuga T, Livak KJ, Unger M, West JA.

Front Bioeng Biotechnol. 2016 Sep 21;4:70. eCollection 2016. Erratum in: Front Bioeng Biotechnol. 2017 Mar 14;5:11.

11.

Multiplexed, targeted profiling of single-cell proteomes and transcriptomes in a single reaction.

Genshaft AS, Li S, Gallant CJ, Darmanis S, Prakadan SM, Ziegler CG, Lundberg M, Fredriksson S, Hong J, Regev A, Livak KJ, Landegren U, Shalek AK.

Genome Biol. 2016 Sep 19;17(1):188. doi: 10.1186/s13059-016-1045-6.

12.

Numerical and experimental study of capillary-driven flow of PCR solution in hybrid hydrophobic microfluidic networks.

Ramalingam N, Warkiani ME, Ramalingam N, Keshavarzi G, Hao-Bing L, Hai-Qing TG.

Biomed Microdevices. 2016 Aug;18(4):68. doi: 10.1007/s10544-016-0099-2.

PMID:
27432321
13.

Altered expression of mir-222 and mir-25 influences diverse gene expression changes in transformed normal and anaplastic thyroid cells, and impacts on MEK and TRAIL protein expression.

Aherne ST, Smyth P, Freeley M, Smith L, Spillane C, O'Leary J, Sheils O.

Int J Mol Med. 2016 Aug;38(2):433-45. doi: 10.3892/ijmm.2016.2653. Epub 2016 Jun 22.

14.

Clonal evolution in patients with chronic lymphocytic leukaemia developing resistance to BTK inhibition.

Burger JA, Landau DA, Taylor-Weiner A, Bozic I, Zhang H, Sarosiek K, Wang L, Stewart C, Fan J, Hoellenriegel J, Sivina M, Dubuc AM, Fraser C, Han Y, Li S, Livak KJ, Zou L, Wan Y, Konoplev S, Sougnez C, Brown JR, Abruzzo LV, Carter SL, Keating MJ, Davids MS, Wierda WG, Cibulskis K, Zenz T, Werner L, Dal Cin P, Kharchencko P, Neuberg D, Kantarjian H, Lander E, Gabriel S, O'Brien S, Letai A, Weitz DA, Nowak MA, Getz G, Wu CJ.

Nat Commun. 2016 May 20;7:11589. doi: 10.1038/ncomms11589.

15.

Expanding preconception carrier screening for the Jewish population using high throughput microfluidics technology and next generation sequencing.

Gal M, Khermesh K, Barak M, Lin M, Lahat H, Reznik Wolf H, Lin M, Pras E, Levanon EY.

BMC Med Genomics. 2016 May 13;9(1):24. doi: 10.1186/s12920-016-0184-7.

16.

CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq.

Hashimshony T, Senderovich N, Avital G, Klochendler A, de Leeuw Y, Anavy L, Gennert D, Li S, Livak KJ, Rozenblatt-Rosen O, Dor Y, Regev A, Yanai I.

Genome Biol. 2016 Apr 28;17:77. doi: 10.1186/s13059-016-0938-8.

17.

Proximity assays for sensitive quantification of proteins.

Greenwood C, Ruff D, Kirvell S, Johnson G, Dhillon HS, Bustin SA.

Biomol Detect Quantif. 2015 May 20;4:10-6. doi: 10.1016/j.bdq.2015.04.002. eCollection 2015 Jun. Review.

18.

Single-cell profiling approaches to probing tumor heterogeneity.

Khoo BL, Chaudhuri PK, Ramalingam N, Tan DS, Lim CT, Warkiani ME.

Int J Cancer. 2016 Jul 15;139(2):243-55. doi: 10.1002/ijc.30006. Epub 2016 Feb 16. Review.

PMID:
26789729
19.

Simple Method To Prepare Oligonucleotide-Conjugated Antibodies and Its Application in Multiplex Protein Detection in Single Cells.

Gong H, Holcomb I, Ooi A, Wang X, Majonis D, Unger MA, Ramakrishnan R.

Bioconjug Chem. 2016 Jan 20;27(1):217-25. doi: 10.1021/acs.bioconjchem.5b00613. Epub 2016 Jan 4.

20.

Molecular identity of human outer radial glia during cortical development.

Pollen AA, Nowakowski TJ, Chen J, Retallack H, Sandoval-Espinosa C, Nicholas CR, Shuga J, Liu SJ, Oldham MC, Diaz A, Lim DA, Leyrat AA, West JA, Kriegstein AR.

Cell. 2015 Sep 24;163(1):55-67. doi: 10.1016/j.cell.2015.09.004.

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