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Disease-mediated bottom-up regulation: An emergent virus affects a keystone prey, and alters the dynamics of trophic webs.

Monterroso P, Garrote G, Serronha A, Santos E, Delibes-Mateos M, Abrantes J, Perez de Ayala R, Silvestre F, Carvalho J, Vasco I, Lopes AM, Maio E, Magalhães MJ, Mills LS, Esteves PJ, Simón MÁ, Alves PC.

Sci Rep. 2016 Oct 31;6:36072. doi: 10.1038/srep36072.


Evolutionary Insights into IL17A in Lagomorphs.

Neves F, Abrantes J, Almeida T, Costa PP, Esteves PJ.

Mediators Inflamm. 2015;2015:367670. doi: 10.1155/2015/367670.


Levels and Patterns of Genetic Diversity and Population Structure in Domestic Rabbits.

Alves JM, Carneiro M, Afonso S, Lopes S, Garreau H, Boucher S, Allain D, Queney G, Esteves PJ, Bolet G, Ferrand N.

PLoS One. 2015 Dec 21;10(12):e0144687. doi: 10.1371/journal.pone.0144687.


Emergence of Pathogenicity in Lagoviruses: Evolution from Pre-existing Nonpathogenic Strains or through a Species Jump?

Esteves PJ, Abrantes J, Bertagnoli S, Cavadini P, Gavier-Widén D, Guitton JS, Lavazza A, Lemaitre E, Letty J, Lopes AM, Neimanis AS, Ruvoën-Clouet N, Le Pendu J, Marchandeau S, Le Gall-Reculé G.

PLoS Pathog. 2015 Nov 5;11(11):e1005087. doi: 10.1371/journal.ppat.1005087. Review. No abstract available.


Genetic characterization of interleukins (IL-1α, IL-1β, IL-2, IL-4, IL-8, IL-10, IL-12A, IL-12B, IL-15 and IL-18) with relevant biological roles in lagomorphs.

Neves F, Abrantes J, Almeida T, de Matos AL, Costa PP, Esteves PJ.

Innate Immun. 2015 Nov;21(8):787-801. doi: 10.1177/1753425915606209.


Neofunctionalization of the Sec1 α1,2fucosyltransferase paralogue in leporids contributes to glycan polymorphism and resistance to rabbit hemorrhagic disease virus.

Nyström K, Abrantes J, Lopes AM, Le Moullac-Vaidye B, Marchandeau S, Rocher J, Ruvoën-Clouet N, Esteves PJ, Le Pendu J.

PLoS Pathog. 2015 Apr 15;11(4):e1004759. doi: 10.1371/journal.ppat.1004759.


Field and experimental data indicate that the eastern cottontail (Sylvilagus floridanus) is susceptible to infection with European brown hare syndrome (EBHS) virus and not with rabbit haemorrhagic disease (RHD) virus.

Lavazza A, Cavadini P, Barbieri I, Tizzani P, Pinheiro A, Abrantes J, Esteves PJ, Grilli G, Gioia E, Zanoni M, Meneguz P, Guitton JS, Marchandeau S, Chiari M, Capucci L.

Vet Res. 2015 Feb 24;46:13. doi: 10.1186/s13567-015-0149-4.


Is the new variant RHDV replacing genogroup 1 in Portuguese wild rabbit populations?

Lopes AM, Correia J, Abrantes J, Melo P, Ramada M, Magalhães MJ, Alves PC, Esteves PJ.

Viruses. 2014 Dec 30;7(1):27-36. doi: 10.3390/v7010027.


Evolution of C, D and S-type cystatins in mammals: an extensive gene duplication in primates.

de Sousa-Pereira P, Abrantes J, Pinheiro A, Colaço B, Vitorino R, Esteves PJ.

PLoS One. 2014 Oct 17;9(10):e109050. doi: 10.1371/journal.pone.0109050.


Detection of RHDV strains in the Iberian hare (Lepus granatensis): earliest evidence of rabbit lagovirus cross-species infection.

Lopes AM, Marques S, Silva E, Magalhães MJ, Pinheiro A, Alves PC, Le Pendu J, Esteves PJ, Thompson G, Abrantes J.

Vet Res. 2014 Sep 24;45:94. doi: 10.1186/s13567-014-0094-7.


Leporid immunoglobulin G shows evidence of strong selective pressure on the hinge and CH3 domains.

Pinheiro A, Woof JM, Almeida T, Abrantes J, Alves PC, Gortázar C, Esteves PJ.

Open Biol. 2014 Sep;4(9):140088. doi: 10.1098/rsob.140088.


Rabbit hemorrhagic disease virus detected in Pico, Azores, Portugal, revealed a unique endemic strain with more than 17 years of independent evolution.

Esteves PJ, Lopes AM, Magalhães MJ, Pinheiro A, Gonçalves D, Abrantes J.

Viruses. 2014 Jul 14;6(7):2698-707. doi: 10.3390/v6072698.


Positive evolutionary selection on the RIG-I-like receptor genes in mammals.

Lemos de Matos A, McFadden G, Esteves PJ.

PLoS One. 2013 Nov 27;8(11):e81864. doi: 10.1371/journal.pone.0081864.


Molecular epidemiology of Rabbit Haemorrhagic Disease Virus in Australia: when one became many.

Kovaliski J, Sinclair R, Mutze G, Peacock D, Strive T, Abrantes J, Esteves PJ, Holmes EC.

Mol Ecol. 2014 Feb;23(2):408-20. doi: 10.1111/mec.12596.


New variant of rabbit hemorrhagic disease virus, Portugal, 2012-2013.

Abrantes J, Lopes AM, Dalton KP, Melo P, Correia JJ, Ramada M, Alves PC, Parra F, Esteves PJ.

Emerg Infect Dis. 2013 Nov;19(11):1900-2. doi: 10.3201/eid1911.130908. No abstract available.


Not so pseudo: the evolutionary history of protein phosphatase 1 regulatory subunit 2 and related pseudogenes.

Korrodi-Gregório L, Abrantes J, Muller T, Melo-Ferreira J, Marcus K, da Cruz e Silva OA, Fardilha M, Esteves PJ.

BMC Evol Biol. 2013 Nov 6;13:242. doi: 10.1186/1471-2148-13-242.


An intriguing shift occurs in the novel protein phosphatase 1 binding partner, TCTEX1D4: evidence of positive selection in a pika model.

Korrodi-Gregório L, Margarida Lopes A, Esteves SL, Afonso S, Lemos de Matos A, Lissovsky AA, da Cruz e Silva OA, da Cruz e Silva EF, Esteves PJ, Fardilha M.

PLoS One. 2013 Oct 10;8(10):e77236. doi: 10.1371/journal.pone.0077236.


Computational analyses of an evolutionary arms race between mammalian immunity mediated by immunoglobulin A and its subversion by bacterial pathogens.

Pinheiro A, Woof JM, Abi-Rached L, Parham P, Esteves PJ.

PLoS One. 2013 Sep 3;8(9):e73934. doi: 10.1371/journal.pone.0073934.


TCTEX1D4, a novel protein phosphatase 1 interactor: connecting the phosphatase to the microtubule network.

Korrodi-Gregório L, Vieira SI, Esteves SL, Silva JV, Freitas MJ, Brauns AK, Luers G, Abrantes J, Esteves PJ, da Cruz E Silva OA, Fardilha M, da Cruz E Silva EF.

Biol Open. 2013 Mar 8;2(5):453-65. doi: 10.1242/bio.20131065.

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