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Items: 1 to 20 of 37

1.

Transcriptome of melanoma cells from two mouse models, Tyr:NRasQ61K and Tyr:Rack1-HA, Tyr:NRasQ61K.

Campagne C, Pons S, Esquerre D, Estellé J, Bourneuf E, Maskos U, Egidy G.

Data Brief. 2017 Jul 11;14:32-34. doi: 10.1016/j.dib.2017.07.006. eCollection 2017 Oct.

2.

Integration of liver gene co-expression networks and eGWAs analyses highlighted candidate regulators implicated in lipid metabolism in pigs.

Ballester M, Ramayo-Caldas Y, Revilla M, Corominas J, Castelló A, Estellé J, Fernández AI, Folch JM.

Sci Rep. 2017 Apr 19;7:46539. doi: 10.1038/srep46539.

3.

RACK1 cooperates with NRASQ61K to promote melanoma in vivo.

Campagne C, Reyes-Gomez E, Picco ME, Loiodice S, Salaun P, Ezagal J, Bernex F, Commère PH, Pons S, Esquerre D, Bourneuf E, Estellé J, Maskos U, Lopez-Bergami P, Aubin-Houzelstein G, Panthier JJ, Egidy G.

Cell Signal. 2017 Aug;36:255-266. doi: 10.1016/j.cellsig.2017.03.015. Epub 2017 Mar 24.

PMID:
28343944
4.

A reference gene catalogue of the pig gut microbiome.

Xiao L, Estellé J, Kiilerich P, Ramayo-Caldas Y, Xia Z, Feng Q, Liang S, Pedersen AØ, Kjeldsen NJ, Liu C, Maguin E, Doré J, Pons N, Le Chatelier E, Prifti E, Li J, Jia H, Liu X, Xu X, Ehrlich SD, Madsen L, Kristiansen K, Rogel-Gaillard C, Wang J.

Nat Microbiol. 2016 Sep 19:16161. doi: 10.1038/nmicrobiol.2016.161. [Epub ahead of print]

PMID:
27643971
5.

Phylogenetic network analysis applied to pig gut microbiota identifies an ecosystem structure linked with growth traits.

Ramayo-Caldas Y, Mach N, Lepage P, Levenez F, Denis C, Lemonnier G, Leplat JJ, Billon Y, Berri M, Doré J, Rogel-Gaillard C, Estellé J.

ISME J. 2016 Dec;10(12):2973-2977. doi: 10.1038/ismej.2016.77. Epub 2016 May 13.

PMID:
27177190
6.

Chronic Trichuris muris Infection Decreases Diversity of the Intestinal Microbiota and Concomitantly Increases the Abundance of Lactobacilli.

Holm JB, Sorobetea D, Kiilerich P, Ramayo-Caldas Y, Estellé J, Ma T, Madsen L, Kristiansen K, Svensson-Frej M.

PLoS One. 2015 May 5;10(5):e0125495. doi: 10.1371/journal.pone.0125495. eCollection 2015.

7.

Epigenetic regulation of the ELOVL6 gene is associated with a major QTL effect on fatty acid composition in pigs.

Corominas J, Marchesi JA, Puig-Oliveras A, Revilla M, Estellé J, Alves E, Folch JM, Ballester M.

Genet Sel Evol. 2015 Mar 25;47:20. doi: 10.1186/s12711-015-0111-y.

8.

Early-life establishment of the swine gut microbiome and impact on host phenotypes.

Mach N, Berri M, Estellé J, Levenez F, Lemonnier G, Denis C, Leplat JJ, Chevaleyre C, Billon Y, Doré J, Rogel-Gaillard C, Lepage P.

Environ Microbiol Rep. 2015 Jun;7(3):554-69. doi: 10.1111/1758-2229.12285. Epub 2015 May 6.

PMID:
25727666
9.

Genome-wide immunity studies in the rabbit: transcriptome variations in peripheral blood mononuclear cells after in vitro stimulation by LPS or PMA-Ionomycin.

Jacquier V, Estellé J, Schmaltz-Panneau B, Lecardonnel J, Moroldo M, Lemonnier G, Turner-Maier J, Duranthon V, Oswald IP, Gidenne T, Rogel-Gaillard C.

BMC Genomics. 2015 Jan 23;16:26. doi: 10.1186/s12864-015-1218-9.

10.

Comparison of whole-genome (13X) and capture (87X) resequencing methods for SNP and genotype callings.

Roux PF, Marthey S, Djari A, Moroldo M, Esquerré D, Estellé J, Klopp C, Lagarrigue S, Demeure O.

Anim Genet. 2015 Feb;46(1):82-6. doi: 10.1111/age.12248. Epub 2014 Dec 16.

PMID:
25515399
11.

A co-association network analysis of the genetic determination of pig conformation, growth and fatness.

Puig-Oliveras A, Ballester M, Corominas J, Revilla M, Estellé J, Fernández AI, Ramayo-Caldas Y, Folch JM.

PLoS One. 2014 Dec 11;9(12):e114862. doi: 10.1371/journal.pone.0114862. eCollection 2014.

12.

Differences in muscle transcriptome among pigs phenotypically extreme for fatty acid composition.

Puig-Oliveras A, Ramayo-Caldas Y, Corominas J, Estellé J, Pérez-Montarelo D, Hudson NJ, Casellas J, Folch JM, Ballester M.

PLoS One. 2014 Jun 13;9(6):e99720. doi: 10.1371/journal.pone.0099720. eCollection 2014. Erratum in: PLoS One. 2014 Jul;9(7):e103668.

13.

KIT and melanoma predisposition in pigs: sequence variants and association analysis.

Fernández-Rodríguez A, Estellé J, Blin A, Muñoz M, Créchet F, Demenais F, Vincent-Naulleau S, Bourneuf E.

Anim Genet. 2014 Jun;45(3):445-8. doi: 10.1111/age.12136. Epub 2014 Mar 15.

PMID:
24628300
14.

Extensive expression differences along porcine small intestine evidenced by transcriptome sequencing.

Mach N, Berri M, Esquerré D, Chevaleyre C, Lemonnier G, Billon Y, Lepage P, Oswald IP, Doré J, Rogel-Gaillard C, Estellé J.

PLoS One. 2014 Feb 12;9(2):e88515. doi: 10.1371/journal.pone.0088515. eCollection 2014.

15.

The peripheral blood transcriptome reflects variations in immunity traits in swine: towards the identification of biomarkers.

Mach N, Gao Y, Lemonnier G, Lecardonnel J, Oswald IP, Estellé J, Rogel-Gaillard C.

BMC Genomics. 2013 Dec 17;14:894. doi: 10.1186/1471-2164-14-894.

16.

Analysis of porcine adipose tissue transcriptome reveals differences in de novo fatty acid synthesis in pigs with divergent muscle fatty acid composition.

Corominas J, Ramayo-Caldas Y, Puig-Oliveras A, Estellé J, Castelló A, Alves E, Pena RN, Ballester M, Folch JM.

BMC Genomics. 2013 Dec 1;14:843. doi: 10.1186/1471-2164-14-843.

17.

The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild.

Prado-Martinez J, Hernando-Herraez I, Lorente-Galdos B, Dabad M, Ramirez O, Baeza-Delgado C, Morcillo-Suarez C, Alkan C, Hormozdiari F, Raineri E, Estellé J, Fernandez-Callejo M, Valles M, Ritscher L, Schöneberg T, de la Calle-Mustienes E, Casillas S, Rubio-Acero R, Melé M, Engelken J, Caceres M, Gomez-Skarmeta JL, Gut M, Bertranpetit J, Gut IG, Abello T, Eichler EE, Mingarro I, Lalueza-Fox C, Navarro A, Marques-Bonet T.

BMC Genomics. 2013 May 31;14:363. doi: 10.1186/1471-2164-14-363.

18.

Prediction of altered 3'- UTR miRNA-binding sites from RNA-Seq data: the swine leukocyte antigen complex (SLA) as a model region.

Endale Ahanda ML, Fritz ER, Estellé J, Hu ZL, Madsen O, Groenen MA, Beraldi D, Kapetanovic R, Hume DA, Rowland RR, Lunney JK, Rogel-Gaillard C, Reecy JM, Giuffra E.

PLoS One. 2012;7(11):e48607. doi: 10.1371/journal.pone.0048607. Epub 2012 Nov 6.

19.

Liver transcriptome profile in pigs with extreme phenotypes of intramuscular fatty acid composition.

Ramayo-Caldas Y, Mach N, Esteve-Codina A, Corominas J, Castelló A, Ballester M, Estellé J, Ibáñez-Escriche N, Fernández AI, Pérez-Enciso M, Folch JM.

BMC Genomics. 2012 Oct 11;13:547. doi: 10.1186/1471-2164-13-547.

20.

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis.

Dillies MA, Rau A, Aubert J, Hennequet-Antier C, Jeanmougin M, Servant N, Keime C, Marot G, Castel D, Estelle J, Guernec G, Jagla B, Jouneau L, Laloë D, Le Gall C, Schaëffer B, Le Crom S, Guedj M, Jaffrézic F; French StatOmique Consortium.

Brief Bioinform. 2013 Nov;14(6):671-83. doi: 10.1093/bib/bbs046. Epub 2012 Sep 17.

PMID:
22988256

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