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Items: 1 to 20 of 24

1.

FARNA: knowledgebase of inferred functions of non-coding RNA transcripts.

Alam T, Uludag M, Essack M, Salhi A, Ashoor H, Hanks JB, Kapfer C, Mineta K, Gojobori T, Bajic VB.

Nucleic Acids Res. 2016 Oct 24. pii: gkw973. [Epub ahead of print]

2.

DRABAL: novel method to mine large high-throughput screening assays using Bayesian active learning.

Soufan O, Ba-Alawi W, Afeef M, Essack M, Kalnis P, Bajic VB.

J Cheminform. 2016 Nov 10;8:64.

3.

TcoF-DB v2: update of the database of human and mouse transcription co-factors and transcription factor interactions.

Schmeier S, Alam T, Essack M, Bajic VB.

Nucleic Acids Res. 2016 Oct 26. pii: gkw1007. [Epub ahead of print]

4.

Metagenomics as a preliminary screen for antimicrobial bioprospecting.

Al-Amoudi S, Razali R, Essack M, Amini MS, Bougouffa S, Archer JA, Lafi FF, Bajic VB.

Gene. 2016 Dec 15;594(2):248-258. doi: 10.1016/j.gene.2016.09.021.

5.

Bioprospecting Red Sea Coastal Ecosystems for Culturable Microorganisms and Their Antimicrobial Potential.

Al-Amoudi S, Essack M, Simões MF, Bougouffa S, Soloviev I, Archer JA, Lafi FF, Bajic VB.

Mar Drugs. 2016 Sep 10;14(9). pii: E165. doi: 10.3390/md14090165.

6.

DASPfind: new efficient method to predict drug-target interactions.

Ba-Alawi W, Soufan O, Essack M, Kalnis P, Bajic VB.

J Cheminform. 2016 Mar 16;8:15. doi: 10.1186/s13321-016-0128-4.

7.

Mining Chemical Activity Status from High-Throughput Screening Assays.

Soufan O, Ba-alawi W, Afeef M, Essack M, Rodionov V, Kalnis P, Bajic VB.

PLoS One. 2015 Dec 14;10(12):e0144426. doi: 10.1371/journal.pone.0144426.

8.

DESM: portal for microbial knowledge exploration systems.

Salhi A, Essack M, Radovanovic A, Marchand B, Bougouffa S, Antunes A, Simoes MF, Lafi FF, Motwalli OA, Bokhari A, Malas T, Amoudi SA, Othum G, Allam I, Mineta K, Gao X, Hoehndorf R, C Archer JA, Gojobori T, Bajic VB.

Nucleic Acids Res. 2016 Jan 4;44(D1):D624-33. doi: 10.1093/nar/gkv1147.

9.

Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea.

Alzubaidy H, Essack M, Malas TB, Bokhari A, Motwalli O, Kamanu FK, Jamhor SA, Mokhtar NA, Antunes A, Simões MF, Alam I, Bougouffa S, Lafi FF, Bajic VB, Archer JA.

Gene. 2016 Feb 1;576(2 Pt 1):626-36. doi: 10.1016/j.gene.2015.10.032.

10.

Insights into the Transcriptional Architecture of Behavioral Plasticity in the Honey Bee Apis mellifera.

Khamis AM, Hamilton AR, Medvedeva YA, Alam T, Alam I, Essack M, Umylny B, Jankovic BR, Naeger NL, Suzuki M, Harbers M, Robinson GE, Bajic VB.

Sci Rep. 2015 Jun 15;5:11136. doi: 10.1038/srep11136.

11.

Distinct profiling of antimicrobial peptide families.

Khamis AM, Essack M, Gao X, Bajic VB.

Bioinformatics. 2015 Mar 15;31(6):849-56. doi: 10.1093/bioinformatics/btu738.

12.

Chemical compounds toxic to invertebrates isolated from marine cyanobacteria of potential relevance to the agricultural industry.

Essack M, Alzubaidy HS, Bajic VB, Archer JA.

Toxins (Basel). 2014 Oct 29;6(11):3058-76. doi: 10.3390/toxins6113058. Review.

13.

DEOP: a database on osmoprotectants and associated pathways.

Bougouffa S, Radovanovic A, Essack M, Bajic VB.

Database (Oxford). 2014 Oct 17;2014. pii: bau100. doi: 10.1093/database/bau100.

14.

Aerobic methanotrophic communities at the Red Sea brine-seawater interface.

Abdallah RZ, Adel M, Ouf A, Sayed A, Ghazy MA, Alam I, Essack M, Lafi FF, Bajic VB, El-Dorry H, Siam R.

Front Microbiol. 2014 Sep 23;5:487. doi: 10.3389/fmicb.2014.00487.

15.

Information exploration system for sickle cell disease and repurposing of hydroxyfasudil.

Essack M, Radovanovic A, Bajic VB.

PLoS One. 2013 Jun 10;8(6):e65190. doi: 10.1371/journal.pone.0065190.

16.

Identification of estrogen responsive genes using esophageal squamous cell carcinoma (ESCC) as a model.

Essack M, MacPherson CR, Schmeier S, Bajic VB.

BMC Syst Biol. 2012 Oct 26;6:135. doi: 10.1186/1752-0509-6-135.

17.

Conotoxins that confer therapeutic possibilities.

Essack M, Bajic VB, Archer JA.

Mar Drugs. 2012 Jun;10(6):1244-65. doi: 10.3390/md10061244. Review.

18.

Recently confirmed apoptosis-inducing lead compounds isolated from marine sponge of potential relevance in cancer treatment.

Essack M, Bajic VB, Archer JA.

Mar Drugs. 2011;9(9):1580-606. doi: 10.3390/md9091580. Review.

19.

Network analysis of microRNAs and their regulation in human ovarian cancer.

Schmeier S, Schaefer U, Essack M, Bajic VB.

BMC Syst Biol. 2011 Nov 3;5:183. doi: 10.1186/1752-0509-5-183.

20.

Deciphering the transcriptional circuitry of microRNA genes expressed during human monocytic differentiation.

Schmeier S, MacPherson CR, Essack M, Kaur M, Schaefer U, Suzuki H, Hayashizaki Y, Bajic VB.

BMC Genomics. 2009 Dec 10;10:595. doi: 10.1186/1471-2164-10-595.

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