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Items: 1 to 20 of 135


Dynamic multifactor hubs interact transiently with sites of active transcription in Drosophila embryos.

Mir M, Stadler MR, Ortiz SA, Hannon CE, Harrison MM, Darzacq X, Eisen MB.

Elife. 2018 Dec 27;7. pii: e40497. doi: 10.7554/eLife.40497.


Single Molecule Imaging in Live Embryos Using Lattice Light-Sheet Microscopy.

Mir M, Reimer A, Stadler M, Tangara A, Hansen AS, Hockemeyer D, Eisen MB, Garcia H, Darzacq X.

Methods Mol Biol. 2018;1814:541-559. doi: 10.1007/978-1-4939-8591-3_32.


Convergent evolution of gene expression in two high-toothed stickleback populations.

Hart JC, Ellis NA, Eisen MB, Miller CT.

PLoS Genet. 2018 Jun 13;14(6):e1007443. doi: 10.1371/journal.pgen.1007443. eCollection 2018 Jun.


Gene family innovation, conservation and loss on the animal stem lineage.

Richter DJ, Fozouni P, Eisen MB, King N.

Elife. 2018 May 31;7. pii: e34226. doi: 10.7554/eLife.34226.


The ecology of the Drosophila-yeast mutualism in wineries.

Quan AS, Eisen MB.

PLoS One. 2018 May 16;13(5):e0196440. doi: 10.1371/journal.pone.0196440. eCollection 2018.


Patterns of chromatin accessibility along the anterior-posterior axis in the early Drosophila embryo.

Haines JE, Eisen MB.

PLoS Genet. 2018 May 4;14(5):e1007367. doi: 10.1371/journal.pgen.1007367. eCollection 2018 May.


Rapid Global Spread of wRi-like Wolbachia across Multiple Drosophila.

Turelli M, Cooper BS, Richardson KM, Ginsberg PS, Peckenpaugh B, Antelope CX, Kim KJ, May MR, Abrieux A, Wilson DA, Bronski MJ, Moore BR, Gao JJ, Eisen MB, Chiu JC, Conner WR, Hoffmann AA.

Curr Biol. 2018 Mar 19;28(6):963-971.e8. doi: 10.1016/j.cub.2018.02.015. Epub 2018 Mar 8.


A molecular atlas of the developing ectoderm defines neural, neural crest, placode, and nonneural progenitor identity in vertebrates.

Plouhinec JL, Medina-Ruiz S, Borday C, Bernard E, Vert JP, Eisen MB, Harland RM, Monsoro-Burq AH.

PLoS Biol. 2017 Oct 19;15(10):e2004045. doi: 10.1371/journal.pbio.2004045. eCollection 2017 Oct.


Atlas…t, patterns from every cell.

Stadler MR, Eisen MB.

Science. 2017 Oct 13;358(6360):172-173. doi: 10.1126/science.aap8493. No abstract available.


Dense Bicoid hubs accentuate binding along the morphogen gradient.

Mir M, Reimer A, Haines JE, Li XY, Stadler M, Garcia H, Eisen MB, Darzacq X.

Genes Dev. 2017 Sep 1;31(17):1784-1794. doi: 10.1101/gad.305078.117.


Patterns of Genome-Wide Diversity and Population Structure in the Drosophila athabasca Species Complex.

Wong Miller KM, Bracewell RR, Eisen MB, Bachtrog D.

Mol Biol Evol. 2017 Aug 1;34(8):1912-1923. doi: 10.1093/molbev/msx134.


Genome-wide measurement of spatial expression in patterning mutants of Drosophila melanogaster.

Combs PA, Eisen MB.

F1000Res. 2017 Jan 12;6:41. doi: 10.12688/f1000research.9720.1. eCollection 2017.


Stable Host Gene Expression in the Gut of Adult Drosophila melanogaster with Different Bacterial Mono-Associations.

Elya C, Zhang V, Ludington WB, Eisen MB.

PLoS One. 2016 Nov 29;11(11):e0167357. doi: 10.1371/journal.pone.0167357. eCollection 2016.


The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion.

Kao D, Lai AG, Stamataki E, Rosic S, Konstantinides N, Jarvis E, Di Donfrancesco A, Pouchkina-Stancheva N, Sémon M, Grillo M, Bruce H, Kumar S, Siwanowicz I, Le A, Lemire A, Eisen MB, Extavour C, Browne WE, Wolff C, Averof M, Patel NH, Sarkies P, Pavlopoulos A, Aboobaker A.

Elife. 2016 Nov 16;5. pii: e20062. doi: 10.7554/eLife.20062.


Oxygen changes drive non-uniform scaling in Drosophila melanogaster embryogenesis.

Kuntz SG, Eisen MB.

F1000Res. 2015 Oct 23;4:1102. doi: 10.12688/f1000research.7221.1. eCollection 2015.


Sex Bias and Maternal Contribution to Gene Expression Divergence in Drosophila Blastoderm Embryos.

Paris M, Villalta JE, Eisen MB, Lott SE.

PLoS Genet. 2015 Oct 20;11(10):e1005592. doi: 10.1371/journal.pgen.1005592. eCollection 2015 Oct.


Transcriptional Activation of the Zygotic Genome in Drosophila.

Harrison MM, Eisen MB.

Curr Top Dev Biol. 2015;113:85-112. doi: 10.1016/bs.ctdb.2015.07.028. Epub 2015 Aug 19. Review.


Ten Years of PLoS Computational Biology: A Decade of Appreciation and Innovation.

Bourne PE, Brenner SE, Eisen MB.

PLoS Comput Biol. 2015 Jun 24;11(6):e1004317. doi: 10.1371/journal.pcbi.1004317. eCollection 2015 Jun. No abstract available.


Low-cost, low-input RNA-seq protocols perform nearly as well as high-input protocols.

Combs PA, Eisen MB.

PeerJ. 2015 Mar 26;3:e869. doi: 10.7717/peerj.869. eCollection 2015.

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