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Items: 17

1.

Diversity and dynamics of the Drosophila transcriptome.

Brown JB, Boley N, Eisman R, May GE, Stoiber MH, Duff MO, Booth BW, Wen J, Park S, Suzuki AM, Wan KH, Yu C, Zhang D, Carlson JW, Cherbas L, Eads BD, Miller D, Mockaitis K, Roberts J, Davis CA, Frise E, Hammonds AS, Olson S, Shenker S, Sturgill D, Samsonova AA, Weiszmann R, Robinson G, Hernandez J, Andrews J, Bickel PJ, Carninci P, Cherbas P, Gingeras TR, Hoskins RA, Kaufman TC, Lai EC, Oliver B, Perrimon N, Graveley BR, Celniker SE.

Nature. 2014 Aug 28;512(7515):393-9.

2.

Population-genomic insights into the evolutionary origin and fate of obligately asexual Daphnia pulex.

Tucker AE, Ackerman MS, Eads BD, Xu S, Lynch M.

Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15740-5. doi: 10.1073/pnas.1313388110. Epub 2013 Aug 19.

3.

Global patterns of tissue-specific alternative polyadenylation in Drosophila.

Smibert P, Miura P, Westholm JO, Shenker S, May G, Duff MO, Zhang D, Eads BD, Carlson J, Brown JB, Eisman RC, Andrews J, Kaufman T, Cherbas P, Celniker SE, Graveley BR, Lai EC.

Cell Rep. 2012 Mar 29;1(3):277-89. Erratum in: Cell Rep. 2013 Mar 28;3(3):969.

4.

The spread of a transposon insertion in Rec8 is associated with obligate asexuality in Daphnia.

Eads BD, Tsuchiya D, Andrews J, Lynch M, Zolan ME.

Proc Natl Acad Sci U S A. 2012 Jan 17;109(3):858-63. doi: 10.1073/pnas.1119667109. Epub 2012 Jan 3.

5.

Pumping ions: rapid parallel evolution of ionic regulation following habitat invasions.

Lee CE, Kiergaard M, Gelembiuk GW, Eads BD, Posavi M.

Evolution. 2011 Aug;65(8):2229-44. doi: 10.1111/j.1558-5646.2011.01308.x. Epub 2011 Apr 27.

PMID:
21790571
6.

The ecoresponsive genome of Daphnia pulex.

Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, Detter JC, Dong Q, Dusheyko S, Eads BD, Fröhlich T, Geiler-Samerotte KA, Gerlach D, Hatcher P, Jogdeo S, Krijgsveld J, Kriventseva EV, Kültz D, Laforsch C, Lindquist E, Lopez J, Manak JR, Muller J, Pangilinan J, Patwardhan RP, Pitluck S, Pritham EJ, Rechtsteiner A, Rho M, Rogozin IB, Sakarya O, Salamov A, Schaack S, Shapiro H, Shiga Y, Skalitzky C, Smith Z, Souvorov A, Sung W, Tang Z, Tsuchiya D, Tu H, Vos H, Wang M, Wolf YI, Yamagata H, Yamada T, Ye Y, Shaw JR, Andrews J, Crease TJ, Tang H, Lucas SM, Robertson HM, Bork P, Koonin EV, Zdobnov EM, Grigoriev IV, Lynch M, Boore JL.

Science. 2011 Feb 4;331(6017):555-61. doi: 10.1126/science.1197761.

7.

The transcriptional diversity of 25 Drosophila cell lines.

Cherbas L, Willingham A, Zhang D, Yang L, Zou Y, Eads BD, Carlson JW, Landolin JM, Kapranov P, Dumais J, Samsonova A, Choi JH, Roberts J, Davis CA, Tang H, van Baren MJ, Ghosh S, Dobin A, Bell K, Lin W, Langton L, Duff MO, Tenney AE, Zaleski C, Brent MR, Hoskins RA, Kaufman TC, Andrews J, Graveley BR, Perrimon N, Celniker SE, Gingeras TR, Cherbas P.

Genome Res. 2011 Feb;21(2):301-14. doi: 10.1101/gr.112961.110. Epub 2010 Dec 22.

8.

Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function.

Costello JC, Dalkilic MM, Beason SM, Gehlhausen JR, Patwardhan R, Middha S, Eads BD, Andrews JR.

Genome Biol. 2009;10(9):R97. doi: 10.1186/gb-2009-10-9-r97. Epub 2009 Sep 16.

9.

Methods for meiotic chromosome preparation, immunofluorescence, and fluorescence in situ hybridization in Daphnia pulex.

Tsuchiya D, Eads BD, Zolan ME.

Methods Mol Biol. 2009;558:235-49. doi: 10.1007/978-1-60761-103-5_14. Review.

PMID:
19685328
10.

Meiosis genes in Daphnia pulex and the role of parthenogenesis in genome evolution.

Schurko AM, Logsdon JM Jr, Eads BD.

BMC Evol Biol. 2009 Apr 21;9:78. doi: 10.1186/1471-2148-9-78.

11.

Recent advances in crustacean genomics.

Stillman JH, Colbourne JK, Lee CE, Patel NH, Phillips MR, Towle DW, Eads BD, Gelembuik GW, Henry RP, Johnson EA, Pfrender ME, Terwilliger NB.

Integr Comp Biol. 2008 Dec;48(6):852-68. Epub 2008 Oct 30.

PMID:
21669837
12.

Profiling sex-biased gene expression during parthenogenetic reproduction in Daphnia pulex.

Eads BD, Colbourne JK, Bohuski E, Andrews J.

BMC Genomics. 2007 Dec 18;8:464.

13.

Sampling Daphnia's expressed genes: preservation, expansion and invention of crustacean genes with reference to insect genomes.

Colbourne JK, Eads BD, Shaw J, Bohuski E, Bauer DJ, Andrews J.

BMC Genomics. 2007 Jul 6;8:217.

14.

Ecological genomics in Daphnia: stress responses and environmental sex determination.

Eads BD, Andrews J, Colbourne JK.

Heredity (Edinb). 2008 Feb;100(2):184-90. Epub 2007 May 23. Review.

17.

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