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Items: 1 to 20 of 28


Computational tools and workflows in metabolomics: An international survey highlights the opportunity for harmonisation through Galaxy.

Weber RJM, Lawson TN, Salek RM, Ebbels TMD, Glen RC, Goodacre R, Griffin JL, Haug K, Koulman A, Moreno P, Ralser M, Steinbeck C, Dunn WB, Viant MR.

Metabolomics. 2017;13(2):12. doi: 10.1007/s11306-016-1147-x. Epub 2016 Dec 27. No abstract available.


Non-targeted UHPLC-MS metabolomic data processing methods: a comparative investigation of normalisation, missing value imputation, transformation and scaling.

Di Guida R, Engel J, Allwood JW, Weber RJ, Jones MR, Sommer U, Viant MR, Dunn WB.

Metabolomics. 2016;12:93. Epub 2016 Apr 15.


Metabolites involved in glycolysis and amino acid metabolism are altered in short children born small for gestational age.

Murray PG, Butcher I, Dunn WB, Stevens A, Perchard R, Hanson D, Whatmore A, Westwood M, Clayton PE.

Pediatr Res. 2016 Aug;80(2):299-305. doi: 10.1038/pr.2016.72. Epub 2016 Apr 8.


Cryptococcal 3-Hydroxy Fatty Acids Protect Cells Against Amoebal Phagocytosis.

Madu UL, Ogundeji AO, Mochochoko BM, Pohl CH, Albertyn J, Swart CW, Allwood JW, Southam AD, Dunn WB, May RC, Sebolai OM.

Front Microbiol. 2015 Dec 9;6:1351. doi: 10.3389/fmicb.2015.01351. eCollection 2015.


Dual-5α-Reductase Inhibition Promotes Hepatic Lipid Accumulation in Man.

Hazlehurst JM, Oprescu AI, Nikolaou N, Di Guida R, Grinbergs AE, Davies NP, Flintham RB, Armstrong MJ, Taylor AE, Hughes BA, Yu J, Hodson L, Dunn WB, Tomlinson JW.

J Clin Endocrinol Metab. 2016 Jan;101(1):103-13. doi: 10.1210/jc.2015-2928. Epub 2015 Nov 17.


Metabolic profiling reveals potential metabolic markers associated with Hypoxia Inducible Factor-mediated signalling in hypoxic cancer cells.

Armitage EG, Kotze HL, Allwood JW, Dunn WB, Goodacre R, Williams KJ.

Sci Rep. 2015 Oct 28;5:15649. doi: 10.1038/srep15649.


Alterations in bone marrow metabolism are an early and consistent feature during the development of MGUS and multiple myeloma.

Ludwig C, Williams DS, Bartlett DB, Essex SJ, McNee G, Allwood JW, Jewell E, Barkhuisen A, Parry H, Anandram S, Nicolson P, Gardener C, Seymour F, Basu S, Dunn WB, Moss PA, Pratt G, Tennant DA.

Blood Cancer J. 2015 Oct 16;5:e359. doi: 10.1038/bcj.2015.85. No abstract available.


Training needs in metabolomics.

Weber RJ, Winder CL, Larcombe LD, Dunn WB, Viant MR.

Metabolomics. 2015;11(4):784-786. Epub 2015 May 29. No abstract available.


Profiling of spatial metabolite distributions in wheat leaves under normal and nitrate limiting conditions.

Allwood JW, Chandra S, Xu Y, Dunn WB, Correa E, Hopkins L, Goodacre R, Tobin AK, Bowsher CG.

Phytochemistry. 2015 Jul;115:99-111. doi: 10.1016/j.phytochem.2015.01.007. Epub 2015 Feb 10.


Molecular phenotyping of a UK population: defining the human serum metabolome.

Dunn WB, Lin W, Broadhurst D, Begley P, Brown M, Zelena E, Vaughan AA, Halsall A, Harding N, Knowles JD, Francis-McIntyre S, Tseng A, Ellis DI, O'Hagan S, Aarons G, Benjamin B, Chew-Graham S, Moseley C, Potter P, Winder CL, Potts C, Thornton P, McWhirter C, Zubair M, Pan M, Burns A, Cruickshank JK, Jayson GC, Purandare N, Wu FC, Finn JD, Haselden JN, Nicholls AW, Wilson ID, Goodacre R, Kell DB.

Metabolomics. 2015;11:9-26. Epub 2014 Jul 25.


MUSCLE: automated multi-objective evolutionary optimization of targeted LC-MS/MS analysis.

Bradbury J, Genta-Jouve G, Allwood JW, Dunn WB, Goodacre R, Knowles JD, He S, Viant MR.

Bioinformatics. 2015 Mar 15;31(6):975-7. doi: 10.1093/bioinformatics/btu740. Epub 2014 Nov 11.


Evidence that multiple defects in lipid regulation occur before hyperglycemia during the prodrome of type-2 diabetes.

Anderson SG, Dunn WB, Banerjee M, Brown M, Broadhurst DI, Goodacre R, Cooper GJ, Kell DB, Cruickshank JK.

PLoS One. 2014 Sep 3;9(9):e103217. doi: 10.1371/journal.pone.0103217. eCollection 2014.


HAMMER: automated operation of mass frontier to construct in silico mass spectral fragmentation libraries.

Zhou J, Weber RJ, Allwood JW, Mistrik R, Zhu Z, Ji Z, Chen S, Dunn WB, He S, Viant MR.

Bioinformatics. 2014 Feb 15;30(4):581-3. doi: 10.1093/bioinformatics/btt711. Epub 2013 Dec 11.


A novel untargeted metabolomics correlation-based network analysis incorporating human metabolic reconstructions.

Kotze HL, Armitage EG, Sharkey KJ, Allwood JW, Dunn WB, Williams KJ, Goodacre R.

BMC Syst Biol. 2013 Oct 23;7:107. doi: 10.1186/1752-0509-7-107.


The role of reporting standards for metabolite annotation and identification in metabolomic studies.

Salek RM, Steinbeck C, Viant MR, Goodacre R, Dunn WB.

Gigascience. 2013 Oct 16;2(1):13. doi: 10.1186/2047-217X-2-13.


A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes.

Smallbone K, Messiha HL, Carroll KM, Winder CL, Malys N, Dunn WB, Murabito E, Swainston N, Dada JO, Khan F, Pir P, Simeonidis E, Spasić I, Wishart J, Weichart D, Hayes NW, Jameson D, Broomhead DS, Oliver SG, Gaskell SJ, McCarthy JE, Paton NW, Westerhoff HV, Kell DB, Mendes P.

FEBS Lett. 2013 Sep 2;587(17):2832-41. doi: 10.1016/j.febslet.2013.06.043. Epub 2013 Jul 4.


A community-driven global reconstruction of human metabolism.

Thiele I, Swainston N, Fleming RM, Hoppe A, Sahoo S, Aurich MK, Haraldsdottir H, Mo ML, Rolfsson O, Stobbe MD, Thorleifsson SG, Agren R, Bölling C, Bordel S, Chavali AK, Dobson P, Dunn WB, Endler L, Hala D, Hucka M, Hull D, Jameson D, Jamshidi N, Jonsson JJ, Juty N, Keating S, Nookaew I, Le Novère N, Malys N, Mazein A, Papin JA, Price ND, Selkov E Sr, Sigurdsson MI, Simeonidis E, Sonnenschein N, Smallbone K, Sorokin A, van Beek JH, Weichart D, Goryanin I, Nielsen J, Westerhoff HV, Kell DB, Mendes P, Palsson BØ.

Nat Biotechnol. 2013 May;31(5):419-25. doi: 10.1038/nbt.2488. Epub 2013 Mar 3.


CASMI-The Small Molecule Identification Process from a Birmingham Perspective.

Allwood JW, Weber RJ, Zhou J, He S, Viant MR, Dunn WB.

Metabolites. 2013 May 21;3(2):397-411. doi: 10.3390/metabo3020397.


Improving metabolic flux predictions using absolute gene expression data.

Lee D, Smallbone K, Dunn WB, Murabito E, Winder CL, Kell DB, Mendes P, Swainston N.

BMC Syst Biol. 2012 Jun 19;6:73. doi: 10.1186/1752-0509-6-73.


Metabolomic analysis of rat serum in streptozotocin-induced diabetes and after treatment with oral triethylenetetramine (TETA).

Ugarte M, Brown M, Hollywood KA, Cooper GJ, Bishop PN, Dunn WB.

Genome Med. 2012 Apr 30;4(4):35.

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