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Meeting Report on Experimental Approaches to Evolution and Ecology Using Yeast and Other Model Systems.

Jarosz D, Dudley AM.

G3 (Bethesda). 2017 Aug 16. pii: g3.300124.2017. doi: 10.1534/g3.117.300124. [Epub ahead of print]


Transcriptional Profiling of Biofilm Regulators Identified by an Overexpression Screen in Saccharomyces cerevisiae.

Cromie GA, Tan Z, Hays M, Sirr A, Jeffery EW, Dudley AM.

G3 (Bethesda). 2017 Aug 7;7(8):2845-2854. doi: 10.1534/g3.117.042440.


The State of Systems Genetics in 2017.

Baliga NS, Björkegren JL, Boeke JD, Boutros M, Crawford NP, Dudley AM, Farber CR, Jones A, Levey AI, Lusis AJ, Mak HC, Nadeau JH, Noyes MB, Petretto E, Seyfried NT, Steinmetz LM, Vonesch SC.

Cell Syst. 2017 Jan 25;4(1):7-15. doi: 10.1016/j.cels.2017.01.005.


Dissecting Gene Expression Changes Accompanying a Ploidy-Based Phenotypic Switch.

Cromie GA, Tan Z, Hays M, Jeffery EW, Dudley AM.

G3 (Bethesda). 2017 Jan 5;7(1):233-246. doi: 10.1534/g3.116.036160.


Independent Origins of Yeast Associated with Coffee and Cacao Fermentation.

Ludlow CL, Cromie GA, Garmendia-Torres C, Sirr A, Hays M, Field C, Jeffery EW, Fay JC, Dudley AM.

Curr Biol. 2016 Apr 4;26(7):965-71. doi: 10.1016/j.cub.2016.02.012. Epub 2016 Mar 24.


Proteomic Analysis of Dhh1 Complexes Reveals a Role for Hsp40 Chaperone Ydj1 in Yeast P-Body Assembly.

Cary GA, Vinh DB, May P, Kuestner R, Dudley AM.

G3 (Bethesda). 2015 Sep 21;5(11):2497-511. doi: 10.1534/g3.115.021444.


Aneuploidy: Tolerating Tolerance.

Cromie GA, Dudley AM.

Curr Biol. 2015 Aug 31;25(17):R771-3. doi: 10.1016/j.cub.2015.06.056.


Allelic variation, aneuploidy, and nongenetic mechanisms suppress a monogenic trait in yeast.

Sirr A, Cromie GA, Jeffery EW, Gilbert TL, Ludlow CL, Scott AC, Dudley AM.

Genetics. 2015 Jan;199(1):247-62. doi: 10.1534/genetics.114.170563. Epub 2014 Nov 13.


Unidirectional P-body transport during the yeast cell cycle.

Garmendia-Torres C, Skupin A, Michael SA, Ruusuvuori P, Kuwada NJ, Falconnet D, Cary GA, Hansen C, Wiggins PA, Dudley AM.

PLoS One. 2014 Jun 11;9(6):e99428. doi: 10.1371/journal.pone.0099428. eCollection 2014.


BEST: barcode enabled sequencing of tetrads.

Scott AC, Ludlow CL, Cromie GA, Dudley AM.

J Vis Exp. 2014 May 1;(87). doi: 10.3791/51401.


Identification and characterization of a drug-sensitive strain enables puromycin-based translational assays in Saccharomyces cerevisiae.

Cary GA, Yoon SH, Torres CG, Wang K, Hays M, Ludlow C, Goodlett DR, Dudley AM.

Yeast. 2014 May;31(5):167-78. doi: 10.1002/yea.3007. Epub 2014 Mar 19.


Quantitative analysis of colony morphology in yeast.

Ruusuvuori P, Lin J, Scott AC, Tan Z, Sorsa S, Kallio A, Nykter M, Yli-Harja O, Shmulevich I, Dudley AM.

Biotechniques. 2014 Jan;56(1):18-27. doi: 10.2144/000114123.


POMO--Plotting Omics analysis results for Multiple Organisms.

Lin J, Kreisberg R, Kallio A, Dudley AM, Nykter M, Shmulevich I, May P, Autio R.

BMC Genomics. 2013 Dec 24;14:918. doi: 10.1186/1471-2164-14-918.


Genomic sequence diversity and population structure of Saccharomyces cerevisiae assessed by RAD-seq.

Cromie GA, Hyma KE, Ludlow CL, Garmendia-Torres C, Gilbert TL, May P, Huang AA, Dudley AM, Fay JC.

G3 (Bethesda). 2013 Dec 9;3(12):2163-71. doi: 10.1534/g3.113.007492.


Aneuploidy underlies a multicellular phenotypic switch.

Tan Z, Hays M, Cromie GA, Jeffery EW, Scott AC, Ahyong V, Sirr A, Skupin A, Dudley AM.

Proc Natl Acad Sci U S A. 2013 Jul 23;110(30):12367-72. doi: 10.1073/pnas.1301047110. Epub 2013 Jun 28.


High-throughput tetrad analysis.

Ludlow CL, Scott AC, Cromie GA, Jeffery EW, Sirr A, May P, Lin J, Gilbert TL, Hays M, Dudley AM.

Nat Methods. 2013 Jul;10(7):671-5. doi: 10.1038/nmeth.2479. Epub 2013 May 12.


Genetics. Systems genetics.

Nadeau JH, Dudley AM.

Science. 2011 Feb 25;331(6020):1015-6. doi: 10.1126/science.1203869. No abstract available.


Surface plasmon resonance biosensor for rapid label-free detection of microribonucleic acid at subfemtomole level.

Sípová H, Zhang S, Dudley AM, Galas D, Wang K, Homola J.

Anal Chem. 2010 Dec 15;82(24):10110-5. doi: 10.1021/ac102131s. Epub 2010 Nov 19.


Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images.

Ruusuvuori P, Aijö T, Chowdhury S, Garmendia-Torres C, Selinummi J, Birbaumer M, Dudley AM, Pelkmans L, Yli-Harja O.

BMC Bioinformatics. 2010 May 13;11:248. doi: 10.1186/1471-2105-11-248.


Learning a prior on regulatory potential from eQTL data.

Lee SI, Dudley AM, Drubin D, Silver PA, Krogan NJ, Pe'er D, Koller D.

PLoS Genet. 2009 Jan;5(1):e1000358. doi: 10.1371/journal.pgen.1000358. Epub 2009 Jan 30.

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