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Items: 19

1.

Characterisation of iron regulatory protein 1A and 1B in the blood-feeding copepod Lepeophtheirus salmonis.

Tröße C, Kongshaug H, Dondrup M, Nilsen F.

Exp Parasitol. 2015 Oct;157:1-11. doi: 10.1016/j.exppara.2015.06.010. Epub 2015 Jun 24.

PMID:
26115940
2.

Finding a needle in the virus metagenome haystack--micro-metagenome analysis captures a snapshot of the diversity of a bacteriophage armoire.

Ray J, Dondrup M, Modha S, Steen IH, Sandaa RA, Clokie M.

PLoS One. 2012;7(4):e34238. doi: 10.1371/journal.pone.0034238. Epub 2012 Apr 11.

3.

Linkage-disequilibrium-based binning affects the interpretation of GWASs.

Christoforou A, Dondrup M, Mattingsdal M, Mattheisen M, Giddaluru S, Nöthen MM, Rietschel M, Cichon S, Djurovic S, Andreassen OA, Jonassen I, Steen VM, Puntervoll P, Le Hellard S.

Am J Hum Genet. 2012 Apr 6;90(4):727-33. doi: 10.1016/j.ajhg.2012.02.025. Epub 2012 Mar 22.

4.

Visualizing post genomics data-sets on customized pathway maps by ProMeTra-aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example.

Neuweger H, Persicke M, Albaum SP, Bekel T, Dondrup M, Hüser AT, Winnebald J, Schneider J, Kalinowski J, Goesmann A.

BMC Syst Biol. 2009 Aug 23;3:82. doi: 10.1186/1752-0509-3-82.

5.

Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress.

Dittami SM, Scornet D, Petit JL, Ségurens B, Da Silva C, Corre E, Dondrup M, Glatting KH, König R, Sterck L, Rouzé P, Van de Peer Y, Cock JM, Boyen C, Tonon T.

Genome Biol. 2009;10(6):R66. doi: 10.1186/gb-2009-10-6-r66. Epub 2009 Jun 16.

6.

An evaluation framework for statistical tests on microarray data.

Dondrup M, Hüser AT, Mertens D, Goesmann A.

J Biotechnol. 2009 Mar 10;140(1-2):18-26.

PMID:
19297690
7.

TRUNCATULIX--a data warehouse for the legume community.

Henckel K, Runte KJ, Bekel T, Dondrup M, Jakobi T, Küster H, Goesmann A.

BMC Plant Biol. 2009 Feb 11;9:19. doi: 10.1186/1471-2229-9-19.

8.

EMMA 2--a MAGE-compliant system for the collaborative analysis and integration of microarray data.

Dondrup M, Albaum SP, Griebel T, Henckel K, Jünemann S, Kahlke T, Kleindt CK, Küster H, Linke B, Mertens D, Mittard-Runte V, Neuweger H, Runte KJ, Tauch A, Tille F, Pühler A, Goesmann A.

BMC Bioinformatics. 2009 Feb 6;10:50. doi: 10.1186/1471-2105-10-50.

9.

A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data.

Becker A, Barnett MJ, Capela D, Dondrup M, Kamp PB, Krol E, Linke B, Rüberg S, Runte K, Schroeder BK, Weidner S, Yurgel SN, Batut J, Long SR, Pühler A, Goesmann A.

J Biotechnol. 2009 Mar 10;140(1-2):45-50. doi: 10.1016/j.jbiotec.2008.11.006. Epub 2008 Dec 6.

10.

MeltDB: a software platform for the analysis and integration of metabolomics experiment data.

Neuweger H, Albaum SP, Dondrup M, Persicke M, Watt T, Niehaus K, Stoye J, Goesmann A.

Bioinformatics. 2008 Dec 1;24(23):2726-32. doi: 10.1093/bioinformatics/btn452. Epub 2008 Sep 2.

PMID:
18765459
11.

The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology.

Schlüter A, Bekel T, Diaz NN, Dondrup M, Eichenlaub R, Gartemann KH, Krahn I, Krause L, Krömeke H, Kruse O, Mussgnug JH, Neuweger H, Niehaus K, Pühler A, Runte KJ, Szczepanowski R, Tauch A, Tilker A, Viehöver P, Goesmann A.

J Biotechnol. 2008 Aug 31;136(1-2):77-90. doi: 10.1016/j.jbiotec.2008.05.008. Epub 2008 May 27.

PMID:
18597880
12.

CoryneCenter - an online resource for the integrated analysis of corynebacterial genome and transcriptome data.

Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, Goesmann A.

BMC Syst Biol. 2007 Nov 22;1:55.

13.

Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses.

Küster H, Becker A, Firnhaber C, Hohnjec N, Manthey K, Perlick AM, Bekel T, Dondrup M, Henckel K, Goesmann A, Meyer F, Wipf D, Requena N, Hildebrandt U, Hampp R, Nehls U, Krajinski F, Franken P, Pühler A.

Phytochemistry. 2007 Jan;68(1):19-32. Epub 2006 Nov 1. Review.

PMID:
17081576
14.

BRIGEP--the BRIDGE-based genome-transcriptome-proteome browser.

Goesmann A, Linke B, Bartels D, Dondrup M, Krause L, Neuweger H, Oehm S, Paczian T, Wilke A, Meyer F.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W710-6.

15.

Construction and validation of cDNA-based Mt6k-RIT macro- and microarrays to explore root endosymbioses in the model legume Medicago truncatula.

Küster H, Hohnjec N, Krajinski F, El YF, Manthey K, Gouzy J, Dondrup M, Meyer F, Kalinowski J, Brechenmacher L, van Tuinen D, Gianinazzi-Pearson V, Pühler A, Gamas P, Becker A.

J Biotechnol. 2004 Mar 4;108(2):95-113.

PMID:
15129719
16.

Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source.

Hüser AT, Becker A, Brune I, Dondrup M, Kalinowski J, Plassmeier J, Pühler A, Wiegräbe I, Tauch A.

J Biotechnol. 2003 Dec 19;106(2-3):269-86.

PMID:
14651867
17.

Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology.

Goesmann A, Linke B, Rupp O, Krause L, Bartels D, Dondrup M, McHardy AC, Wilke A, Pühler A, Meyer F.

J Biotechnol. 2003 Dec 19;106(2-3):157-67.

PMID:
14651858
18.

Bioinformatics support for high-throughput proteomics.

Wilke A, Rückert C, Bartels D, Dondrup M, Goesmann A, Hüser AT, Kespohl S, Linke B, Mahne M, McHardy A, Pühler A, Meyer F.

J Biotechnol. 2003 Dec 19;106(2-3):147-56.

PMID:
14651857
19.

EMMA: a platform for consistent storage and efficient analysis of microarray data.

Dondrup M, Goesmann A, Bartels D, Kalinowski J, Krause L, Linke B, Rupp O, Sczyrba A, Pühler A, Meyer F.

J Biotechnol. 2003 Dec 19;106(2-3):135-46.

PMID:
14651856

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