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Items: 1 to 20 of 34

1.

Systematic discovery of mutation-specific synthetic lethals by mining pan-cancer human primary tumor data.

Sinha S, Thomas D, Chan S, Gao Y, Brunen D, Torabi D, Reinisch A, Hernandez D, Chan A, Rankin EB, Bernards R, Majeti R, Dill DL.

Nat Commun. 2017 May 31;8:15580. doi: 10.1038/ncomms15580.

2.

A geographically-diverse collection of 418 human gut microbiome pathway genome databases.

Hahn AS, Altman T, Konwar KM, Hanson NW, Kim D, Relman DA, Dill DL, Hallam SJ.

Sci Data. 2017 Apr 11;4:170035. doi: 10.1038/sdata.2017.35.

3.

Cell cycle progression in Caulobacter requires a nucleoid-associated protein with high AT sequence recognition.

Ricci DP, Melfi MD, Lasker K, Dill DL, McAdams HH, Shapiro L.

Proc Natl Acad Sci U S A. 2016 Oct 4;113(40):E5952-E5961. Epub 2016 Sep 19.

4.

The multiple PDZ domain protein Mpdz/MUPP1 regulates opioid tolerance and opioid-induced hyperalgesia.

Donaldson R, Sun Y, Liang DY, Zheng M, Sahbaie P, Dill DL, Peltz G, Buck KJ, Clark JD.

BMC Genomics. 2016 Apr 29;17:313. doi: 10.1186/s12864-016-2634-1.

5.

A Pharmacogenetic Discovery: Cystamine Protects Against Haloperidol-Induced Toxicity and Ischemic Brain Injury.

Zhang H, Zheng M, Wu M, Xu D, Nishimura T, Nishimura Y, Giffard R, Xiong X, Xu LJ, Clark JD, Sahbaie P, Dill DL, Peltz G.

Genetics. 2016 May;203(1):599-609. doi: 10.1534/genetics.115.184648. Epub 2016 Mar 18.

6.

CauloBrowser: A systems biology resource for Caulobacter crescentus.

Lasker K, Schrader JM, Men Y, Marshik T, Dill DL, McAdams HH, Shapiro L.

Nucleic Acids Res. 2016 Jan 4;44(D1):D640-5. doi: 10.1093/nar/gkv1050. Epub 2015 Oct 17.

7.

Towards in vivo estimation of reaction kinetics using high-throughput metabolomics data: a maximum likelihood approach.

Zhang W, Kolte R, Dill DL.

BMC Syst Biol. 2015 Oct 5;9:66. doi: 10.1186/s12918-015-0214-7.

8.

The role of Abcb5 alleles in susceptibility to haloperidol-induced toxicity in mice and humans.

Zheng M, Zhang H, Dill DL, Clark JD, Tu S, Yablonovitch AL, Tan MH, Zhang R, Rujescu D, Wu M, Tessarollo L, Vieira W, Gottesman MM, Deng S, Eberlin LS, Zare RN, Billard JM, Gillet JP, Li JB, Peltz G.

PLoS Med. 2015 Feb 3;12(2):e1001782. doi: 10.1371/journal.pmed.1001782. eCollection 2015 Feb.

9.

The global regulatory architecture of transcription during the Caulobacter cell cycle.

Zhou B, Schrader JM, Kalogeraki VS, Abeliuk E, Dinh CB, Pham JQ, Cui ZZ, Dill DL, McAdams HH, Shapiro L.

PLoS Genet. 2015 Jan 8;11(1):e1004831. doi: 10.1371/journal.pgen.1004831. eCollection 2015 Jan.

10.

Mutant WT1 is associated with DNA hypermethylation of PRC2 targets in AML and responds to EZH2 inhibition.

Sinha S, Thomas D, Yu L, Gentles AJ, Jung N, Corces-Zimmerman MR, Chan SM, Reinisch A, Feinberg AP, Dill DL, Majeti R.

Blood. 2015 Jan 8;125(2):316-26. doi: 10.1182/blood-2014-03-566018. Epub 2014 Nov 14.

11.

MYC through miR-17-92 suppresses specific target genes to maintain survival, autonomous proliferation, and a neoplastic state.

Li Y, Choi PS, Casey SC, Dill DL, Felsher DW.

Cancer Cell. 2014 Aug 11;26(2):262-72. doi: 10.1016/j.ccr.2014.06.014.

12.

Mining TCGA data using Boolean implications.

Sinha S, Tsang EK, Zeng H, Meister M, Dill DL.

PLoS One. 2014 Jul 23;9(7):e102119. doi: 10.1371/journal.pone.0102119. eCollection 2014.

13.

Automated identification of stratifying signatures in cellular subpopulations.

Bruggner RV, Bodenmiller B, Dill DL, Tibshirani RJ, Nolan GP.

Proc Natl Acad Sci U S A. 2014 Jul 1;111(26):E2770-7. doi: 10.1073/pnas.1408792111. Epub 2014 Jun 16.

14.

Liquid chromatography/mass spectrometry methods for measuring dipeptide abundance in non-small-cell lung cancer.

Wu M, Xu Y, Fitch WL, Zheng M, Merritt RE, Shrager JB, Zhang W, Dill DL, Peltz G, Hoang CD.

Rapid Commun Mass Spectrom. 2013 Sep 30;27(18):2091-2098. doi: 10.1002/rcm.6656.

15.

Identification of drug targets by chemogenomic and metabolomic profiling in yeast.

Wu M, Zheng M, Zhang W, Suresh S, Schlecht U, Fitch WL, Aronova S, Baumann S, Davis R, St Onge R, Dill DL, Peltz G.

Pharmacogenet Genomics. 2012 Dec;22(12):877-86. doi: 10.1097/FPC.0b013e32835aa888.

PMID:
23076370
16.

Gene Expression Commons: an open platform for absolute gene expression profiling.

Seita J, Sahoo D, Rossi DJ, Bhattacharya D, Serwold T, Inlay MA, Ehrlich LI, Fathman JW, Dill DL, Weissman IL.

PLoS One. 2012;7(7):e40321. doi: 10.1371/journal.pone.0040321. Epub 2012 Jul 18.

17.

Cd14 SNPs regulate the innate immune response.

Liu HH, Hu Y, Zheng M, Suhoski MM, Engleman EG, Dill DL, Hudnall M, Wang J, Spolski R, Leonard WJ, Peltz G.

Mol Immunol. 2012 Jun;51(2):112-27. doi: 10.1016/j.molimm.2012.02.112. Epub 2012 Mar 23.

18.

MiDReG: a method of mining developmentally regulated genes using Boolean implications.

Sahoo D, Seita J, Bhattacharya D, Inlay MA, Weissman IL, Plevritis SK, Dill DL.

Proc Natl Acad Sci U S A. 2010 Mar 30;107(13):5732-7. doi: 10.1073/pnas.0913635107. Epub 2010 Mar 15.

19.

Timing robustness in the budding and fission yeast cell cycles.

Mangla K, Dill DL, Horowitz MA.

PLoS One. 2010 Feb 1;5(2):e8906. doi: 10.1371/journal.pone.0008906.

20.

Ly6d marks the earliest stage of B-cell specification and identifies the branchpoint between B-cell and T-cell development.

Inlay MA, Bhattacharya D, Sahoo D, Serwold T, Seita J, Karsunky H, Plevritis SK, Dill DL, Weissman IL.

Genes Dev. 2009 Oct 15;23(20):2376-81. doi: 10.1101/gad.1836009. Erratum in: Genes Dev. 2013 Sep 15;27(18):2063.

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