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Items: 1 to 20 of 86

1.

2μ plasmid in Saccharomyces species and in Saccharomyces cerevisiae.

Strope PK, Kozmin SG, Skelly DA, Magwene PM, Dietrich FS, McCusker JH.

FEMS Yeast Res. 2015 Dec;15(8). pii: fov090. doi: 10.1093/femsyr/fov090.

2.

The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen.

Strope PK, Skelly DA, Kozmin SG, Mahadevan G, Stone EA, Magwene PM, Dietrich FS, McCusker JH.

Genome Res. 2015 May;25(5):762-74. doi: 10.1101/gr.185538.114.

3.

Structures of naturally evolved CUP1 tandem arrays in yeast indicate that these arrays are generated by unequal nonhomologous recombination.

Zhao Y, Strope PK, Kozmin SG, McCusker JH, Dietrich FS, Kokoska RJ, Petes TD.

G3 (Bethesda). 2014 Sep 17;4(11):2259-69. doi: 10.1534/g3.114.012922.

4.

Cryptococcus gattii VGIII isolates causing infections in HIV/AIDS patients in Southern California: identification of the local environmental source as arboreal.

Springer DJ, Billmyre RB, Filler EE, Voelz K, Pursall R, Mieczkowski PA, Larsen RA, Dietrich FS, May RC, Filler SG, Heitman J.

PLoS Pathog. 2014 Aug 21;10(8):e1004285. doi: 10.1371/journal.ppat.1004285.

5.

Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation.

Janbon G, Ormerod KL, Paulet D, Byrnes EJ 3rd, Yadav V, Chatterjee G, Mullapudi N, Hon CC, Billmyre RB, Brunel F, Bahn YS, Chen W, Chen Y, Chow EW, Coppée JY, Floyd-Averette A, Gaillardin C, Gerik KJ, Goldberg J, Gonzalez-Hilarion S, Gujja S, Hamlin JL, Hsueh YP, Ianiri G, Jones S, Kodira CD, Kozubowski L, Lam W, Marra M, Mesner LD, Mieczkowski PA, Moyrand F, Nielsen K, Proux C, Rossignol T, Schein JE, Sun S, Wollschlaeger C, Wood IA, Zeng Q, Neuvéglise C, Newlon CS, Perfect JR, Lodge JK, Idnurm A, Stajich JE, Kronstad JW, Sanyal K, Heitman J, Fraser JA, Cuomo CA, Dietrich FS.

PLoS Genet. 2014 Apr 17;10(4):e1004261. doi: 10.1371/journal.pgen.1004261.

6.

The reference genome sequence of Saccharomyces cerevisiae: then and now.

Engel SR, Dietrich FS, Fisk DG, Binkley G, Balakrishnan R, Costanzo MC, Dwight SS, Hitz BC, Karra K, Nash RS, Weng S, Wong ED, Lloyd P, Skrzypek MS, Miyasato SR, Simison M, Cherry JM.

G3 (Bethesda). 2014 Mar 20;4(3):389-98. doi: 10.1534/g3.113.008995.

7.

Unisexual and heterosexual meiotic reproduction generate aneuploidy and phenotypic diversity de novo in the yeast Cryptococcus neoformans.

Ni M, Feretzaki M, Li W, Floyd-Averette A, Mieczkowski P, Dietrich FS, Heitman J.

PLoS Biol. 2013 Sep;11(9):e1001653. doi: 10.1371/journal.pbio.1001653.

8.

Reconstructing genome evolution in historic samples of the Irish potato famine pathogen.

Martin MD, Cappellini E, Samaniego JA, Zepeda ML, Campos PF, Seguin-Orlando A, Wales N, Orlando L, Ho SY, Dietrich FS, Mieczkowski PA, Heitman J, Willerslev E, Krogh A, Ristaino JB, Gilbert MT.

Nat Commun. 2013;4:2172. doi: 10.1038/ncomms3172.

9.

Genomes of Ashbya fungi isolated from insects reveal four mating-type loci, numerous translocations, lack of transposons, and distinct gene duplications.

Dietrich FS, Voegeli S, Kuo S, Philippsen P.

G3 (Bethesda). 2013 Aug 7;3(8):1225-39. doi: 10.1534/g3.112.002881.

10.

High-throughput genome sequencing of lichenizing fungi to assess gene loss in the ammonium transporter/ammonia permease gene family.

McDonald TR, Mueller O, Dietrich FS, Lutzoni F.

BMC Genomics. 2013 Apr 4;14:225. doi: 10.1186/1471-2164-14-225.

11.

Discovery of a modified tetrapolar sexual cycle in Cryptococcus amylolentus and the evolution of MAT in the Cryptococcus species complex.

Findley K, Sun S, Fraser JA, Hsueh YP, Averette AF, Li W, Dietrich FS, Heitman J.

PLoS Genet. 2012;8(2):e1002528. doi: 10.1371/journal.pgen.1002528.

12.

High-resolution genome-wide analysis of irradiated (UV and γ-rays) diploid yeast cells reveals a high frequency of genomic loss of heterozygosity (LOH) events.

St Charles J, Hazkani-Covo E, Yin Y, Andersen SL, Dietrich FS, Greenwell PW, Malc E, Mieczkowski P, Petes TD.

Genetics. 2012 Apr;190(4):1267-84. doi: 10.1534/genetics.111.137927.

13.

A diverse population of Cryptococcus gattii molecular type VGIII in southern Californian HIV/AIDS patients.

Byrnes EJ 3rd, Li W, Ren P, Lewit Y, Voelz K, Fraser JA, Dietrich FS, May RC, Chaturvedi S, Chaturvedi V, Heitman J.

PLoS Pathog. 2011 Sep;7(9):e1002205. doi: 10.1371/journal.ppat.1002205. Erratum in: PLoS Pathog. 2011 Nov;7(11). doi:10.1371/annotation/a23709b0-8d67-4b57-aa05-d5d70d830724. Chatuverdi, Sudha [corrected to Chaturvedi, Sudha]; Chatuverdi, Vishnu [corrected to Chaturvedi, Vishnu].

14.

A whole-genome analysis of premature termination codons.

Cirulli ET, Heinzen EL, Dietrich FS, Shianna KV, Singh A, Maia JM, Goedert JJ, Goldstein DB.

Genomics. 2011 Nov;98(5):337-42. doi: 10.1016/j.ygeno.2011.07.001.

15.
16.

Oxidative stress survival in a clinical Saccharomyces cerevisiae isolate is influenced by a major quantitative trait nucleotide.

Diezmann S, Dietrich FS.

Genetics. 2011 Jul;188(3):709-22. doi: 10.1534/genetics.111.128256.

17.

Coupled-channel calculation of nonelastic cross sections using a density-functional structure model.

Nobre GP, Dietrich FS, Escher JE, Thompson IJ, Dupuis M, Terasaki J, Engel J.

Phys Rev Lett. 2010 Nov 12;105(20):202502.

PMID:
21231224
18.

Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus).

Stajich JE, Wilke SK, Ahrén D, Au CH, Birren BW, Borodovsky M, Burns C, Canbäck B, Casselton LA, Cheng CK, Deng J, Dietrich FS, Fargo DC, Farman ML, Gathman AC, Goldberg J, Guigó R, Hoegger PJ, Hooker JB, Huggins A, James TY, Kamada T, Kilaru S, Kodira C, Kües U, Kupfer D, Kwan HS, Lomsadze A, Li W, Lilly WW, Ma LJ, Mackey AJ, Manning G, Martin F, Muraguchi H, Natvig DO, Palmerini H, Ramesh MA, Rehmeyer CJ, Roe BA, Shenoy N, Stanke M, Ter-Hovhannisyan V, Tunlid A, Velagapudi R, Vision TJ, Zeng Q, Zolan ME, Pukkila PJ.

Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11889-94. doi: 10.1073/pnas.1003391107.

19.

Evolution of the sex-related locus and genomic features shared in microsporidia and fungi.

Lee SC, Corradi N, Doan S, Dietrich FS, Keeling PJ, Heitman J.

PLoS One. 2010 May 7;5(5):e10539. doi: 10.1371/journal.pone.0010539.

20.

Morphological and genomic characterization of Filobasidiella depauperata: a homothallic sibling species of the pathogenic cryptococcus species complex.

Rodriguez-Carres M, Findley K, Sun S, Dietrich FS, Heitman J.

PLoS One. 2010 Mar 10;5(3):e9620. doi: 10.1371/journal.pone.0009620.

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