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Items: 1 to 20 of 105

1.

The global distribution and spread of the mobilized colistin resistance gene mcr-1.

Wang R, van Dorp L, Shaw LP, Bradley P, Wang Q, Wang X, Jin L, Zhang Q, Liu Y, Rieux A, Dorai-Schneiders T, Weinert LA, Iqbal Z, Didelot X, Wang H, Balloux F.

Nat Commun. 2018 Mar 21;9(1):1179. doi: 10.1038/s41467-018-03205-z.

2.

Correction to: Neisseria lactamica Y92-1009 complete genome sequence.

Pandey AK, Cleary DW, Laver JR, Maiden MCJ, Didelot X, Gorringe A, Read RC.

Stand Genomic Sci. 2018 Feb 16;13:4. doi: 10.1186/s40793-017-0288-5. eCollection 2018.

3.
4.

A phylogenetic method to perform genome-wide association studies in microbes that accounts for population structure and recombination.

Collins C, Didelot X.

PLoS Comput Biol. 2018 Feb 5;14(2):e1005958. doi: 10.1371/journal.pcbi.1005958. eCollection 2018 Feb.

5.

Range Expansion and the Origin of USA300 North American Epidemic Methicillin-Resistant Staphylococcus aureus.

Challagundla L, Luo X, Tickler IA, Didelot X, Coleman DC, Shore AC, Coombs GW, Sordelli DO, Brown EL, Skov R, Larsen AR, Reyes J, Robledo IE, Vazquez GJ, Rivera R, Fey PD, Stevenson K, Wang SH, Kreiswirth BN, Mediavilla JR, Arias CA, Planet PJ, Nolan RL, Tenover FC, Goering RV, Robinson DA.

MBio. 2018 Jan 2;9(1). pii: e02016-17. doi: 10.1128/mBio.02016-17.

6.

Estimating the fitness cost and benefit of cefixime resistance in Neisseria gonorrhoeae to inform prescription policy: A modelling study.

Whittles LK, White PJ, Didelot X.

PLoS Med. 2017 Oct 31;14(10):e1002416. doi: 10.1371/journal.pmed.1002416. eCollection 2017 Oct.

7.

Whole genome sequencing of Neisseria gonorrhoeae reveals transmission clusters involving patients of mixed HIV serostatus.

Peters J, Cresswell F, Amor L, Cole K, Dean G, Didelot X, De Silva D, Eyre DW, Paul J.

Sex Transm Infect. 2018 Mar;94(2):138-143. doi: 10.1136/sextrans-2017-053198. Epub 2017 Oct 11.

PMID:
29021406
8.

Neisseria lactamica Y92-1009 complete genome sequence.

Pandey AK, Cleary DW, Laver JR, Maiden MCJ, Didelot X, Gorringe A, Read RC.

Stand Genomic Sci. 2017 Jul 24;12:41. doi: 10.1186/s40793-017-0250-6. eCollection 2017. Erratum in: Stand Genomic Sci. 2018 Feb 16;13:4.

9.

A combined case-control and molecular source attribution study of human Campylobacter infections in Germany, 2011-2014.

Rosner BM, Schielke A, Didelot X, Kops F, Breidenbach J, Willrich N, Gölz G, Alter T, Stingl K, Josenhans C, Suerbaum S, Stark K.

Sci Rep. 2017 Jul 11;7(1):5139. doi: 10.1038/s41598-017-05227-x.

10.

Model-based analysis of an outbreak of bubonic plague in Cairo in 1801.

Didelot X, Whittles LK, Hall I.

J R Soc Interface. 2017 Jun;14(131). pii: 20170160. doi: 10.1098/rsif.2017.0160.

11.

Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination.

Mostowy RJ, Croucher NJ, De Maio N, Chewapreecha C, Salter SJ, Turner P, Aanensen DM, Bentley SD, Didelot X, Fraser C.

Mol Biol Evol. 2017 Oct 1;34(10):2537-2554. doi: 10.1093/molbev/msx173.

12.

Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks.

Klinkenberg D, Backer JA, Didelot X, Colijn C, Wallinga J.

PLoS Comput Biol. 2017 May 18;13(5):e1005495. doi: 10.1371/journal.pcbi.1005495. eCollection 2017 May.

13.

Local genes for local bacteria: Evidence of allopatry in the genomes of transatlantic Campylobacter populations.

Pascoe B, Méric G, Yahara K, Wimalarathna H, Murray S, Hitchings MD, Sproston EL, Carrillo CD, Taboada EN, Cooper KK, Huynh S, Cody AJ, Jolley KA, Maiden MCJ, McCarthy ND, Didelot X, Parker CT, Sheppard SK.

Mol Ecol. 2017 Sep;26(17):4497-4508. doi: 10.1111/mec.14176. Epub 2017 Jun 19.

14.

Clostridium difficile in England: can we stop washing our hands? - Authors' reply.

Eyre DW, Dingle KE, Didelot X, Quan TP, Peto TEA, Wilcox MH, Walker AS, Crook DW.

Lancet Infect Dis. 2017 May;17(5):478-479. doi: 10.1016/S1473-3099(17)30185-8. No abstract available.

PMID:
28447949
15.

Evolution and Transmission of Carbapenem-Resistant Klebsiella pneumoniae Expressing the blaOXA-232 Gene During an Institutional Outbreak Associated With Endoscopic Retrograde Cholangiopancreatography.

Yang S, Hemarajata P, Hindler J, Li F, Adisetiyo H, Aldrovandi G, Sebra R, Kasarskis A, MacCannell D, Didelot X, Russell D, Rubin Z, Humphries R.

Clin Infect Dis. 2017 Apr 1;64(7):894-901. doi: 10.1093/cid/ciw876.

PMID:
28362935
16.

Declaring a tuberculosis outbreak over with genomic epidemiology.

Hatherell HA, Didelot X, Pollock SL, Tang P, Crisan A, Johnston JC, Colijn C, Gardy JL.

Microb Genom. 2016 May 31;2(5):e000060. doi: 10.1099/mgen.0.000060. eCollection 2016 May.

17.

Effects of control interventions on Clostridium difficile infection in England: an observational study.

Dingle KE, Didelot X, Quan TP, Eyre DW, Stoesser N, Golubchik T, Harding RM, Wilson DJ, Griffiths D, Vaughan A, Finney JM, Wyllie DH, Oakley SJ, Fawley WN, Freeman J, Morris K, Martin J, Howard P, Gorbach S, Goldstein EJC, Citron DM, Hopkins S, Hope R, Johnson AP, Wilcox MH, Peto TEA, Walker AS, Crook DW; Modernising Medical Microbiology Informatics Group.

Lancet Infect Dis. 2017 Apr;17(4):411-421. doi: 10.1016/S1473-3099(16)30514-X. Epub 2017 Jan 25.

18.

Re-emergence of methicillin susceptibility in a resistant lineage of Staphylococcus aureus.

Ledda A, Price JR, Cole K, Llewelyn MJ, Kearns AM, Crook DW, Paul J, Didelot X.

J Antimicrob Chemother. 2017 May 1;72(5):1285-1288. doi: 10.1093/jac/dkw570.

19.

Genomic Infectious Disease Epidemiology in Partially Sampled and Ongoing Outbreaks.

Didelot X, Fraser C, Gardy J, Colijn C.

Mol Biol Evol. 2017 Apr 1;34(4):997-1007. doi: 10.1093/molbev/msw275.

20.

Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.

Ratmann O, Hodcroft EB, Pickles M, Cori A, Hall M, Lycett S, Colijn C, Dearlove B, Didelot X, Frost S, Hossain AS, Joy JB, Kendall M, Kühnert D, Leventhal GE, Liang R, Plazzotta G, Poon AF, Rasmussen DA, Stadler T, Volz E, Weis C, Leigh Brown AJ, Fraser C; PANGEA-HIV Consortium.

Mol Biol Evol. 2017 Jan;34(1):185-203. doi: 10.1093/molbev/msw217. Epub 2016 Oct 7.

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